Table 3.

Correlation scores of signaling pathways inferred by PROGENy with Notch activity in root 1 vs root 2 leukemic cells

CorrelationP
PI3K – Notch −0.69 <2.2e−16 
VEGF – Notch −0.12 .022 
EGFR – Notch −0.26 1.60e−06 
Hypoxia – Notch 0.75 <2.2e−16 
MAPK – Notch 0.68 <2.2e−16 
p53 – Notch 0.7 <2.2e−16 
TGFβ – Notch 0.66 <2.2e−16 
JAK/STAT – Notch 0.52 <2.2e−16 
TNFα – Notch 0.62 <2.2e−16 
NF-κB – Notch 0.57 <2.2e−16 
Trail – Notch 0.54 <2.2e−16 
PIM – Notch 0.65 <2.2e−16 
MYC – Notch 0.74 <2.2e−16 
CorrelationP
PI3K – Notch −0.69 <2.2e−16 
VEGF – Notch −0.12 .022 
EGFR – Notch −0.26 1.60e−06 
Hypoxia – Notch 0.75 <2.2e−16 
MAPK – Notch 0.68 <2.2e−16 
p53 – Notch 0.7 <2.2e−16 
TGFβ – Notch 0.66 <2.2e−16 
JAK/STAT – Notch 0.52 <2.2e−16 
TNFα – Notch 0.62 <2.2e−16 
NF-κB – Notch 0.57 <2.2e−16 
Trail – Notch 0.54 <2.2e−16 
PIM – Notch 0.65 <2.2e−16 
MYC – Notch 0.74 <2.2e−16 

EGFR, endothelial growth factor receptor; MAPK, mitogen-activated protein kinase; TGF, transforming growth factor; TNF, tumor necrosis factor; VEGF, vascular endothelial growth factor.

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