TERT rare variants in MDS
| TERT rarevariant . | Structural domain . | gnomAD max popAF . | ACMG/AMP classification . | Sherloc classification . | CADD Phred score . | ClinVar accession no. . |
|---|---|---|---|---|---|---|
| p.C76S | TEN | 0 | VUS | VUS | 10.59 | |
| p.V84M | TEN | 0 | VUS | VUS | 22.8 | |
| p.G110A | TEN | 0 | VUS | VUS | 15.96 | |
| p.G135R | TEN | 0.0008400 | VUS | VUS | 16.84 | VCV000410665 |
| p.R263H | Linker | 0 | VUS | VUS | 3.266 | |
| p.H296P | Linker | 0.0002000 | VUS | VUS | 4.311 | VCV000268080 |
| p.G306S | Linker | 0 | VUS | VUS | 4.83 | |
| p.V435L | TRBD | 0 | VUS | VUS | 6.863 | |
| p.V461E | TRBD | 0 | VUS | VUS | 26.5 | |
| p.E484K | TRBD | 0 | VUS | VUS | 2.57 | VCV000955018 |
| p.R485C | TRBD | 0.0000638 | VUS | VUS | 18.03 | |
| p.A532T | TRBD | 0.0000265 | VUS | VUS | 10.15 | VCV000581635 |
| p.T567M | TRBD | 0 | VUS | VUS | 17.36 | |
| p.K570R | TRBD | 0 | VUS | VUS | 23.7 | |
| c.1770-2A>G | TRBD | 0 | VUS | VUS | 26.2 | |
| p.R622H | RTD | 0 | VUS | VUS | 24.9 | |
| p.S663G | RTD | 0 | VUS | VUS | 13.49 | |
| p.R669W | RTD | 0.0000531 | VUS | VUS | 22.5 | VCV000539196 |
| p.R698Q | RTD | 0 | VUS | VUS | 23.5 | |
| p.G715D | RTD | 0 | VUS | VUS | 24.3 | |
| p.Q722R | RTD | 0 | VUS | VUS | 23.7 | VCV000471853 |
| p.V741L | RTD | 0.0002000 | VUS | VUS | 14.03 | VCV000652891 |
| p.L766S | RTD | 0 | VUS | VUS | 22.4 | |
| p.P771L | RTD | 0 | VUS | VUS | 24.1 | |
| p.V777M | RTD | 0 | VUS | VUS | 19.9 | VCV000436985 |
| p.G847S | RTD | 0.00006482 | VUS | VUS | 24.4 | |
| p.D848N | RTD | 0.0000089 | VUS | VUS | 22.8 | |
| p.R865C | RTD | 0.0000240 | LP | LP | 24.6 | VCV000986922 |
| p.V867M | RTD | 0.0000000 | VUS | VUS | 22.6 | VCV000242683 |
| p.T917M | RTD | 0.0001240 | VUS | VUS | 21.5 | VCV000857994 |
| p.R951W | CTE | 0.000008833 | VUS | VUS | 20.9 | VCV000836202 |
| p.S984R | CTE | 0.000008828 | VUS | VUS | 15.71 | |
| p.L994F | CTE | 0.00002716 | VUS | VUS | 22.7 | VCV000580043 |
| p.A1014P | CTE | 0 | VUS | VUS | 24.5 | |
| p.S1041F | CTE | 0 | VUS | VUS | 17.63 | |
| p.R1086C | CTE | 0 | VUS | VUS | 15.92 | |
| p.R1086H* | CTE | 0.000839 | VUS | VUS | 20.6 | VCV000242237 |
| p.V1090M | CTE | 0.0003000 | VUS | VUS | 15.67 | VCV000012733 |
| p.R1105W | CTE | 0 | VUS | VUS | 22.2 | VCV000939229 |
| p.T1110M | CTE | 0.0002000 | VUS | VUS | 12.05 | VCV000039122 |
| TERT rarevariant . | Structural domain . | gnomAD max popAF . | ACMG/AMP classification . | Sherloc classification . | CADD Phred score . | ClinVar accession no. . |
|---|---|---|---|---|---|---|
| p.C76S | TEN | 0 | VUS | VUS | 10.59 | |
| p.V84M | TEN | 0 | VUS | VUS | 22.8 | |
| p.G110A | TEN | 0 | VUS | VUS | 15.96 | |
| p.G135R | TEN | 0.0008400 | VUS | VUS | 16.84 | VCV000410665 |
| p.R263H | Linker | 0 | VUS | VUS | 3.266 | |
| p.H296P | Linker | 0.0002000 | VUS | VUS | 4.311 | VCV000268080 |
| p.G306S | Linker | 0 | VUS | VUS | 4.83 | |
| p.V435L | TRBD | 0 | VUS | VUS | 6.863 | |
| p.V461E | TRBD | 0 | VUS | VUS | 26.5 | |
| p.E484K | TRBD | 0 | VUS | VUS | 2.57 | VCV000955018 |
| p.R485C | TRBD | 0.0000638 | VUS | VUS | 18.03 | |
| p.A532T | TRBD | 0.0000265 | VUS | VUS | 10.15 | VCV000581635 |
| p.T567M | TRBD | 0 | VUS | VUS | 17.36 | |
| p.K570R | TRBD | 0 | VUS | VUS | 23.7 | |
| c.1770-2A>G | TRBD | 0 | VUS | VUS | 26.2 | |
| p.R622H | RTD | 0 | VUS | VUS | 24.9 | |
| p.S663G | RTD | 0 | VUS | VUS | 13.49 | |
| p.R669W | RTD | 0.0000531 | VUS | VUS | 22.5 | VCV000539196 |
| p.R698Q | RTD | 0 | VUS | VUS | 23.5 | |
| p.G715D | RTD | 0 | VUS | VUS | 24.3 | |
| p.Q722R | RTD | 0 | VUS | VUS | 23.7 | VCV000471853 |
| p.V741L | RTD | 0.0002000 | VUS | VUS | 14.03 | VCV000652891 |
| p.L766S | RTD | 0 | VUS | VUS | 22.4 | |
| p.P771L | RTD | 0 | VUS | VUS | 24.1 | |
| p.V777M | RTD | 0 | VUS | VUS | 19.9 | VCV000436985 |
| p.G847S | RTD | 0.00006482 | VUS | VUS | 24.4 | |
| p.D848N | RTD | 0.0000089 | VUS | VUS | 22.8 | |
| p.R865C | RTD | 0.0000240 | LP | LP | 24.6 | VCV000986922 |
| p.V867M | RTD | 0.0000000 | VUS | VUS | 22.6 | VCV000242683 |
| p.T917M | RTD | 0.0001240 | VUS | VUS | 21.5 | VCV000857994 |
| p.R951W | CTE | 0.000008833 | VUS | VUS | 20.9 | VCV000836202 |
| p.S984R | CTE | 0.000008828 | VUS | VUS | 15.71 | |
| p.L994F | CTE | 0.00002716 | VUS | VUS | 22.7 | VCV000580043 |
| p.A1014P | CTE | 0 | VUS | VUS | 24.5 | |
| p.S1041F | CTE | 0 | VUS | VUS | 17.63 | |
| p.R1086C | CTE | 0 | VUS | VUS | 15.92 | |
| p.R1086H* | CTE | 0.000839 | VUS | VUS | 20.6 | VCV000242237 |
| p.V1090M | CTE | 0.0003000 | VUS | VUS | 15.67 | VCV000012733 |
| p.R1105W | CTE | 0 | VUS | VUS | 22.2 | VCV000939229 |
| p.T1110M | CTE | 0.0002000 | VUS | VUS | 12.05 | VCV000039122 |
CADD, combined annotation-dependent depletion.
R1086H occurred in 2 patients.