Table 4.

Summary of PANTHER analysis of shared and gene-specific dysregulated genes

Gene sets*No. of genesNo. of biological processes and/or molecular functionsMost significant FDRPredominant functions
Shared, FANC, SBDS, and DKC1, up 26 4.88E-11 Ribosome constituent, translation 
Shared, FANC, SBDS, and DKC1, down NA NA 
FANC-specific, up 554 NA NA 
FANC-specific, down 142 19 9.0E-65 Antigen binding, complement activation 
SBDS-specific, up 152 1.59E-05 Neutrophil degranulation 
SBDS-specific, down 85 NA NA 
DKC1-specific, up 182 28 2.74E-18 Ribosome constituent, RNA binding, complement activation 
DKC1-specific, down 148 NA NA 
Gene sets*No. of genesNo. of biological processes and/or molecular functionsMost significant FDRPredominant functions
Shared, FANC, SBDS, and DKC1, up 26 4.88E-11 Ribosome constituent, translation 
Shared, FANC, SBDS, and DKC1, down NA NA 
FANC-specific, up 554 NA NA 
FANC-specific, down 142 19 9.0E-65 Antigen binding, complement activation 
SBDS-specific, up 152 1.59E-05 Neutrophil degranulation 
SBDS-specific, down 85 NA NA 
DKC1-specific, up 182 28 2.74E-18 Ribosome constituent, RNA binding, complement activation 
DKC1-specific, down 148 NA NA 

Gene lists are provided in supplemental Table 5, details of the 26 shared upregulated genes are provided in supplemental Table 6, and the lists of GO terms for biological processes and molecular function are provided in supplemental Table 7.

NA, none available.

*

Differentially expressed, FDR < 0.05.

The most stringent GO terms for biological process or molecular function, FDR < 0.001.

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