RefSeq transcripts inversely correlated between DNA methylation and expression
| Cluster . | Hypermethylated underexpressed in DLBCL . | Examples . | Hypomethylated overexpressed in DLBCL . | Examples . |
|---|---|---|---|---|
| A | 2 | FLJ40869, UBE2J1 | 4 | CD3D, GIMAP1, NMB, VSTM3, FLJ40869 |
| B | 0 | — | 6 | CALD1, CD3D, GIMAP1, NMB, RHOBTB3, VSTM3 |
| C | 3 | CBX5, PIK3CG, PPAT | 1 | GZMK |
| D | 2 | COPG2, UBE2J1 | 9 | CALD1, CD3D, DPT, GIMAP5, GUCY1B3, GZMK, NMB, PLSCR4, S100A9 |
| E | 7 | ASXL1, CYS1, EDEM1, FBXL7, PIK3CG, SHROOM2, UBE2J1 | 30 | CALD1, CD3D, DPT, GIMAP5, GUCY1B3, GZMK, NENF, NMB, RHOBTB3, SERPING1, TNFRSF1B |
| F | 176 | ASXL1, BCL7A, CDK1, CHEK1, ETS1, MS12, SERPING1, PPAT, RECQL4, SMARCD2, SOX5, STAT5B, STIL, TAF15, THRAP3, UHFR2 | 87 | BTN3A1, CALD1, CD37, CD3D, CD63, CXCL13, FLT3, FXYD2, GIMAP7, GTF3A, HLA-A, SERPING1, TSC22D4, VSTM3 |
| Cluster . | Hypermethylated underexpressed in DLBCL . | Examples . | Hypomethylated overexpressed in DLBCL . | Examples . |
|---|---|---|---|---|
| A | 2 | FLJ40869, UBE2J1 | 4 | CD3D, GIMAP1, NMB, VSTM3, FLJ40869 |
| B | 0 | — | 6 | CALD1, CD3D, GIMAP1, NMB, RHOBTB3, VSTM3 |
| C | 3 | CBX5, PIK3CG, PPAT | 1 | GZMK |
| D | 2 | COPG2, UBE2J1 | 9 | CALD1, CD3D, DPT, GIMAP5, GUCY1B3, GZMK, NMB, PLSCR4, S100A9 |
| E | 7 | ASXL1, CYS1, EDEM1, FBXL7, PIK3CG, SHROOM2, UBE2J1 | 30 | CALD1, CD3D, DPT, GIMAP5, GUCY1B3, GZMK, NENF, NMB, RHOBTB3, SERPING1, TNFRSF1B |
| F | 176 | ASXL1, BCL7A, CDK1, CHEK1, ETS1, MS12, SERPING1, PPAT, RECQL4, SMARCD2, SOX5, STAT5B, STIL, TAF15, THRAP3, UHFR2 | 87 | BTN3A1, CALD1, CD37, CD3D, CD63, CXCL13, FLT3, FXYD2, GIMAP7, GTF3A, HLA-A, SERPING1, TSC22D4, VSTM3 |