Target nucleotide mutation frequency (%) in hypermutable motifs
Mutated base and motif . | X-HIgM . | Normal donor . | ||
---|---|---|---|---|
NP . | P . | NP . | P . | |
G | ||||
Inside RGYW | 2/1770 (0.11) | 25.5/7730.5 (0.29)* | 92/832 (11.06)* | 757/5618 (13.47)* |
All other G | 11/12258 (0.09) | 62.5/51099.5 (0.12) | 102/5984 (1.70) | 950/38080 (2.49) |
C | ||||
Inside WRCY | 7.5/1504 (0.50)*† | 12.5/6392.5 (0.20)* | 60/736 (8.15)* | 445/4561 (9.76)* |
All other C | 7.5/11034 (0.07) | 39.5/46456 (0.09) | 76/5606 (1.36) | 782/35736 (2.19) |
A | ||||
Inside WA | 8/5370.75 (0.10) | 54/22097 (0.24)* | 133.25/2463.25 (5.41)*† | 913.8/15111 (6.05)* |
All other A | 5/7263.25 (0.07) | 22/30527 (0.07) | 55.75/3412.75 (1.63) | 436.2/22300 (1.96) |
T | ||||
Inside TW | 6/2480 (0.24)* | 22/13866 (0.16)* | 59.5/1531.25 (3.89)* | 498.5/10008.5 (4.98)* |
All other T | 5/7788 (0.06) | 12/29179 (0.04) | 44.5/3586.75 (1.24) | 175.5/22503.5 (0.78) |
A | ||||
Inside RGYW | 3.75/1483.25 (0.25)* | 15/6545.5 (0.23)* | 34/719.25 (4.73)* | 291/4701.3 (6.19)* |
All other A | 8.25/11150.75 (0.07) | 61/46078.5 (0.13) | 155/5156.75 (3.01) | 1059/32709.7 (3.24) |
A | ||||
Inside WRCY | 1.25/1678.75 (0.07) | 9/7172.5 (0.13) | 27/804.75 (3.36) | 197/4967.8 (3.97) |
All other A | 10.75/10955.25 (0.10) | 67/45451.5 (0.15) | 162/5071.25 (3.19) | 1153/32443 (3.56) |
Mutated base and motif . | X-HIgM . | Normal donor . | ||
---|---|---|---|---|
NP . | P . | NP . | P . | |
G | ||||
Inside RGYW | 2/1770 (0.11) | 25.5/7730.5 (0.29)* | 92/832 (11.06)* | 757/5618 (13.47)* |
All other G | 11/12258 (0.09) | 62.5/51099.5 (0.12) | 102/5984 (1.70) | 950/38080 (2.49) |
C | ||||
Inside WRCY | 7.5/1504 (0.50)*† | 12.5/6392.5 (0.20)* | 60/736 (8.15)* | 445/4561 (9.76)* |
All other C | 7.5/11034 (0.07) | 39.5/46456 (0.09) | 76/5606 (1.36) | 782/35736 (2.19) |
A | ||||
Inside WA | 8/5370.75 (0.10) | 54/22097 (0.24)* | 133.25/2463.25 (5.41)*† | 913.8/15111 (6.05)* |
All other A | 5/7263.25 (0.07) | 22/30527 (0.07) | 55.75/3412.75 (1.63) | 436.2/22300 (1.96) |
T | ||||
Inside TW | 6/2480 (0.24)* | 22/13866 (0.16)* | 59.5/1531.25 (3.89)* | 498.5/10008.5 (4.98)* |
All other T | 5/7788 (0.06) | 12/29179 (0.04) | 44.5/3586.75 (1.24) | 175.5/22503.5 (0.78) |
A | ||||
Inside RGYW | 3.75/1483.25 (0.25)* | 15/6545.5 (0.23)* | 34/719.25 (4.73)* | 291/4701.3 (6.19)* |
All other A | 8.25/11150.75 (0.07) | 61/46078.5 (0.13) | 155/5156.75 (3.01) | 1059/32709.7 (3.24) |
A | ||||
Inside WRCY | 1.25/1678.75 (0.07) | 9/7172.5 (0.13) | 27/804.75 (3.36) | 197/4967.8 (3.97) |
All other A | 10.75/10955.25 (0.10) | 67/45451.5 (0.15) | 162/5071.25 (3.19) | 1153/32443 (3.56) |
The data include all nonproductive and productive mutations in patients with X-HIgM and normal donors. The targeted nucleotide refers to the base in the underlined position (or two positions; eg, A in the first and second position in the WA motif where W indicates A or T). The mutation frequency of the targeted nucleotide inside a motif equals the number of target nucleotide mutations/the total number of the nucleotide in the motif. The nucleotide mutation frequency outside the motif targeted position(s) equals (the total number of specific base mutations in the sequence − the number of targeted nucleotide mutations in the motif)/(the total number of the base in the sequence − the number of target nucleotides inside the motif). The extent of targeting was determined by calculating the fold difference between the mutation frequency inside versus outside a motif.
Significant (P < .02) difference in the nucleotide mutation frequency inside a motif versus outside a motif.
Significant (P < .02) difference in the nucleotide mutation frequency in nonproductive versus productive rearrangements.