The number of unique sequences incorporated into the analyses
. | IGHV1 . | IGHV2 . | IGHV3 . | IGHV4 . | IGHV5 . | IGHV6 . | IGHV7 . | Total unique . | Overall total* . |
---|---|---|---|---|---|---|---|---|---|
Naive | 113 | 13 | 328 | 182 | 14 | 9 | 3 | 662 | 806 |
Transitional | 40 | 12 | 232 | 135 | 8 | 6 | 0 | 433 | 551 |
IgM memory | 21 | 80 | 762 | 279 | 27 | 40 | 0 | 1209 | 1741 |
IgG | 220 | 21 | 249 | 151 | 22 | 12 | 4 | 679 | 1065 |
IgA | 197 | 28 | 216 | 141 | 15 | 15 | 2 | 614 | 1002 |
IgG+ or IgA+ | 417 | 49 | 465 | 292 | 37 | 27 | 6 | 1293 | 2067 |
. | IGHV1 . | IGHV2 . | IGHV3 . | IGHV4 . | IGHV5 . | IGHV6 . | IGHV7 . | Total unique . | Overall total* . |
---|---|---|---|---|---|---|---|---|---|
Naive | 113 | 13 | 328 | 182 | 14 | 9 | 3 | 662 | 806 |
Transitional | 40 | 12 | 232 | 135 | 8 | 6 | 0 | 433 | 551 |
IgM memory | 21 | 80 | 762 | 279 | 27 | 40 | 0 | 1209 | 1741 |
IgG | 220 | 21 | 249 | 151 | 22 | 12 | 4 | 679 | 1065 |
IgA | 197 | 28 | 216 | 141 | 15 | 15 | 2 | 614 | 1002 |
IgG+ or IgA+ | 417 | 49 | 465 | 292 | 37 | 27 | 6 | 1293 | 2067 |
The numbers in the table refer to the number of unique sequences, where only 1 example of a clonal expansion is counted, the overall total is the total number of sequences obtained before each adjustment was made. There is a high rate of attrition of sequence reads from the 454. The numbers here represent, on average, 20% of the initial data as 60% of sequences either do not pass our quality control checks or do not return results from V-QUEST.24 A further 20% were removed as they lacked some component of the full immunoglobulin VDJC gene rearrangement, for example, some of the sequences in the IgD-CD27- or IgD- CD27+ populations could not be identified as being switched due to lack of C region sequence so were not included.