Table 1

The number of unique sequences incorporated into the analyses

IGHV1IGHV2IGHV3IGHV4IGHV5IGHV6IGHV7Total uniqueOverall total*
Naive 113 13 328 182 14 662 806 
Transitional 40 12 232 135 433 551 
IgM memory 21 80 762 279 27 40 1209 1741 
IgG 220 21 249 151 22 12 679 1065 
IgA 197 28 216 141 15 15 614 1002 
IgG+ or IgA+ 417 49 465 292 37 27 1293 2067 
IGHV1IGHV2IGHV3IGHV4IGHV5IGHV6IGHV7Total uniqueOverall total*
Naive 113 13 328 182 14 662 806 
Transitional 40 12 232 135 433 551 
IgM memory 21 80 762 279 27 40 1209 1741 
IgG 220 21 249 151 22 12 679 1065 
IgA 197 28 216 141 15 15 614 1002 
IgG+ or IgA+ 417 49 465 292 37 27 1293 2067 
*

The numbers in the table refer to the number of unique sequences, where only 1 example of a clonal expansion is counted, the overall total is the total number of sequences obtained before each adjustment was made. There is a high rate of attrition of sequence reads from the 454. The numbers here represent, on average, 20% of the initial data as 60% of sequences either do not pass our quality control checks or do not return results from V-QUEST.24  A further 20% were removed as they lacked some component of the full immunoglobulin VDJC gene rearrangement, for example, some of the sequences in the IgD-CD27- or IgD- CD27+ populations could not be identified as being switched due to lack of C region sequence so were not included.

Close Modal

or Create an Account

Close Modal
Close Modal