Pc Gene Sequences Obtained From cDNA Isolated From Purified CD34+ Human Bone Marrow Cells With Degenerate Oligonucleotides Designed Based on Conserved Sequences ofPcGenes
Pc Genes . | cDNA Sequences Between Degenerate Oligos (and Translation) . | No. of Clones* Sequenced . | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R | V | V | K | G | Q | V | E | Y | L | L | K | W | K | G | F | S | E | E | H | |||
1. HP1Hsα | G | CGC | GTG | GTT | AAG | GGA | CAA | GTG | GAA | TAT | CTA | CTG | AAG | TGG | AAA | GGC | TTT | TCT | GAG | GAG | CAC | 31† |
H | ||||||||||||||||||||||
2. HP1Hsα-like A | . | .AT | ... | ... | ... | ..G | ... | ... | ..G | ... | ..G | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | 3 |
E | ||||||||||||||||||||||
3. HP1Hsα-like B | . | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | G.. | ... | ... | ... | ... | ... | ... | ... | ... | 4† |
F | ||||||||||||||||||||||
4. HP1Hsα-like C | . | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | .T. | ... | ... | ... | 3† |
R | V | V | N | G | K | V | E | Y | F | L | K | W | K | G | F | T | D | A | D | |||
5. HP1Hsγ | A | CGT | GTA | GTG | AAT | GGG | AAA | GTG | GAA | TAT | TTC | CTG | AAG | TGG | AAG | GGA | TTT | ACA | GAT | GCT | GAC | 15† |
R | V | V | K | G | K | V | E | Y | L | L | K | W | K | G | F | S | D | E | D | |||
6. p25 | T | CGA | GTG | GTA | AAG | GGC | AAA | GTG | GAG | TAC | CTC | CTA | AAG | TGG | AAG | GGA | TTC | TCA | GAT | GAG | GAC | 3 |
D | E | |||||||||||||||||||||
7. p25-like | . | ... | ... | ... | ... | .A. | ... | ... | ... | ... | ... | ... | ... | ... | ... | .A. | ... | ... | ... | ... | ..T | 1 |
R | V | V | N | G | K | V | E | Y | F | L | K | W | K | G | F | T | D | A | D | |||
8. M32 (homologue) | T | CAT | GTA | GTG | AAT | GGG | AAG | GTG | GAG | TAT | TTC | CTG | AAG | TGG | AAG | GGG | TTC | ACA | GAT | GCT | GAT | 2† |
9. Several HP1Hsα-like with a single mutation (considered as potential PCR-induced mutations) | 6 | |||||||||||||||||||||
10. One HP1Hsγ-like with a single mutation | 1 |
Pc Genes . | cDNA Sequences Between Degenerate Oligos (and Translation) . | No. of Clones* Sequenced . | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R | V | V | K | G | Q | V | E | Y | L | L | K | W | K | G | F | S | E | E | H | |||
1. HP1Hsα | G | CGC | GTG | GTT | AAG | GGA | CAA | GTG | GAA | TAT | CTA | CTG | AAG | TGG | AAA | GGC | TTT | TCT | GAG | GAG | CAC | 31† |
H | ||||||||||||||||||||||
2. HP1Hsα-like A | . | .AT | ... | ... | ... | ..G | ... | ... | ..G | ... | ..G | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | 3 |
E | ||||||||||||||||||||||
3. HP1Hsα-like B | . | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | G.. | ... | ... | ... | ... | ... | ... | ... | ... | 4† |
F | ||||||||||||||||||||||
4. HP1Hsα-like C | . | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | .T. | ... | ... | ... | 3† |
R | V | V | N | G | K | V | E | Y | F | L | K | W | K | G | F | T | D | A | D | |||
5. HP1Hsγ | A | CGT | GTA | GTG | AAT | GGG | AAA | GTG | GAA | TAT | TTC | CTG | AAG | TGG | AAG | GGA | TTT | ACA | GAT | GCT | GAC | 15† |
R | V | V | K | G | K | V | E | Y | L | L | K | W | K | G | F | S | D | E | D | |||
6. p25 | T | CGA | GTG | GTA | AAG | GGC | AAA | GTG | GAG | TAC | CTC | CTA | AAG | TGG | AAG | GGA | TTC | TCA | GAT | GAG | GAC | 3 |
D | E | |||||||||||||||||||||
7. p25-like | . | ... | ... | ... | ... | .A. | ... | ... | ... | ... | ... | ... | ... | ... | ... | .A. | ... | ... | ... | ... | ..T | 1 |
R | V | V | N | G | K | V | E | Y | F | L | K | W | K | G | F | T | D | A | D | |||
8. M32 (homologue) | T | CAT | GTA | GTG | AAT | GGG | AAG | GTG | GAG | TAT | TTC | CTG | AAG | TGG | AAG | GGG | TTC | ACA | GAT | GCT | GAT | 2† |
9. Several HP1Hsα-like with a single mutation (considered as potential PCR-induced mutations) | 6 | |||||||||||||||||||||
10. One HP1Hsγ-like with a single mutation | 1 |
*Four additional clones were unrelated to Pc-G genes.
Sequences obtained from 2 independent PCR reactions.