Table 2

Functional Annotation Clustering of differentially expressed genes

Annotation termPFalse discovery rate
Annotation cluster 1 Enrichment score: 9.08   
    Cell activation 3.3 × 10−13 6.0 × 10−10 
    Leukocyte activation 8.6 × 10−13 1.5 × 10−9 
    Lymphocyte activation 1.1 × 10−11 2.0 × 10−8 
    Lymphocyte differentiation 2.3 × 10−11 4.1 × 10−8 
    Leukocyte differentiation 3.8 × 10−11 6.9 × 10−8 
    Hematopoietic or lymphoid organ development 1.4 × 10−10 2.6 × 10−7 
    Immune system development 9.0 × 10−10 1.6 × 10−6 
    Hemopoiesis 1.6 × 9−13 2.8 × 10−6 
    T-cell activation 1.1 × 10−8 2.0 × 10−5 
    T-cell differentiation 1.1 × 10−8 2.0 × 10−5 
    B-cell activation 1.9 × 10−5 3.4 × 10−2 
    B-cell differentiation 9.9 × 10−5 1.8 × 10−1 
Annotation cluster 2 Enrichment score: 8.09   
    Immunoglobulin-like 2.5 × 10−15 3.9 × 10−12 
    Immunoglobulin-like fold 3.0 × 10−15 4.8 × 10−12 
    Immunoglobulin domain 5.6 × 10−11 8.1 × 10−8 
    Immunoglobulin V-set 2.1 × 10−4 3.4 × 10−1 
    Immunoglobulin subtype 3.0 × 10−4 4.8 × 10−1 
    Immunoglobulin 1.1 × 10−2 1.3 × 10 
Annotation termPFalse discovery rate
Annotation cluster 1 Enrichment score: 9.08   
    Cell activation 3.3 × 10−13 6.0 × 10−10 
    Leukocyte activation 8.6 × 10−13 1.5 × 10−9 
    Lymphocyte activation 1.1 × 10−11 2.0 × 10−8 
    Lymphocyte differentiation 2.3 × 10−11 4.1 × 10−8 
    Leukocyte differentiation 3.8 × 10−11 6.9 × 10−8 
    Hematopoietic or lymphoid organ development 1.4 × 10−10 2.6 × 10−7 
    Immune system development 9.0 × 10−10 1.6 × 10−6 
    Hemopoiesis 1.6 × 9−13 2.8 × 10−6 
    T-cell activation 1.1 × 10−8 2.0 × 10−5 
    T-cell differentiation 1.1 × 10−8 2.0 × 10−5 
    B-cell activation 1.9 × 10−5 3.4 × 10−2 
    B-cell differentiation 9.9 × 10−5 1.8 × 10−1 
Annotation cluster 2 Enrichment score: 8.09   
    Immunoglobulin-like 2.5 × 10−15 3.9 × 10−12 
    Immunoglobulin-like fold 3.0 × 10−15 4.8 × 10−12 
    Immunoglobulin domain 5.6 × 10−11 8.1 × 10−8 
    Immunoglobulin V-set 2.1 × 10−4 3.4 × 10−1 
    Immunoglobulin subtype 3.0 × 10−4 4.8 × 10−1 
    Immunoglobulin 1.1 × 10−2 1.3 × 10 

The list of differentially expressed genes was used as input for the Functional Annotation Clustering function of DAVID Bioinformatics Resources 6.7.29  The 2 most relevant clusters are reported.

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