Table 4

Top 20 genes (among 71 genes represented in both ChIP-chip and RNA expression profiling datasets) ranked according to their ChIP-chip score

Fold difference HOXB4/GFPGene symbolGene titleChIP-chip rank (of 1910)RNA expression profiling rank (of 465)
8.39* Gp49a Glycoprotein 49 A 29 4 
2.50 Rab38 Rab38, member of RAS oncogene family 68 169 
−2.53† 2010301N04Rik RIKEN cDNA 2010301N04 gene 88 369 
3.65 Clec4e C-type lectin domain family 4, member e 95 38 
9.82* Laptm4b Lysosomal-associated protein transmembrane 4B 96 2 
2.76 AI586015 Expressed sequence AI586015 122 111 
2.19 Arhgap15 Rho GTPase activating protein 15 141 257 
2.13 Bmp2k BMP2 inducible kinase 162 284 
−2.14† Rpl3 Ribosomal protein L3/similar to 60S ribosomal protein L3 (J1 protein) 188 331 
4.26 Kazald1 Kazal-type serine peptidase inhibitor domain 1 208 24 
3.90 Chchd6 Coiled-coil-helix-coiled-coil-helix domain containing 6 328 32 
2.68 Zfp521 Zinc finger protein 521 379 125 
2.46 Tm2d2 TM2 domain containing 2 382 184 
2.45 Fcgr2b Fc receptor, IgG, low affinity IIb 399 187 
−2.73† Rad23a RAD23a homolog (S cerevisiae) 440 381 
2.17 Als2 Amyotrophic lateral sclerosis 2 (juvenile) homolog (human) 454 272 
2.79 Mfge8 Milk fat globule-EGF factor 8 protein 488 106 
2.07 Scap2 src family associated phosphoprotein 2 510 309 
2.45 Rab19 RAB19, member RAS oncogene family 533 185 
2.64 1500041B16Rik RIKEN cDNA 1500041B16 gene 586 133 
Fold difference HOXB4/GFPGene symbolGene titleChIP-chip rank (of 1910)RNA expression profiling rank (of 465)
8.39* Gp49a Glycoprotein 49 A 29 4 
2.50 Rab38 Rab38, member of RAS oncogene family 68 169 
−2.53† 2010301N04Rik RIKEN cDNA 2010301N04 gene 88 369 
3.65 Clec4e C-type lectin domain family 4, member e 95 38 
9.82* Laptm4b Lysosomal-associated protein transmembrane 4B 96 2 
2.76 AI586015 Expressed sequence AI586015 122 111 
2.19 Arhgap15 Rho GTPase activating protein 15 141 257 
2.13 Bmp2k BMP2 inducible kinase 162 284 
−2.14† Rpl3 Ribosomal protein L3/similar to 60S ribosomal protein L3 (J1 protein) 188 331 
4.26 Kazald1 Kazal-type serine peptidase inhibitor domain 1 208 24 
3.90 Chchd6 Coiled-coil-helix-coiled-coil-helix domain containing 6 328 32 
2.68 Zfp521 Zinc finger protein 521 379 125 
2.46 Tm2d2 TM2 domain containing 2 382 184 
2.45 Fcgr2b Fc receptor, IgG, low affinity IIb 399 187 
−2.73† Rad23a RAD23a homolog (S cerevisiae) 440 381 
2.17 Als2 Amyotrophic lateral sclerosis 2 (juvenile) homolog (human) 454 272 
2.79 Mfge8 Milk fat globule-EGF factor 8 protein 488 106 
2.07 Scap2 src family associated phosphoprotein 2 510 309 
2.45 Rab19 RAB19, member RAS oncogene family 533 185 
2.64 1500041B16Rik RIKEN cDNA 1500041B16 gene 586 133 

An RNA expression profile rank of 321 or below are gene transcripts observed to be down-regulated at least 2-fold.

*

Gp49a and Laptm4b show up as highly ranked in both lists.

†

Down-regulated genes.

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