Table 5

SNP-HLA haplotype frequencies in the HapMap CEU dataset

rs204999-rs9268528-rs9268542-rs6903608-rs2858870HLA-DRB1-HLA-DQB1HLA haplotype frequencyDistribution of HLA haplotypes by SNP haplotype
A-G-G-C-T 1101-0301 2.99% 31% 
A-G-G-C-T 1401-0503 2.99% 31% 
A-G-G-C-T 1301-0603 1.49% 14% 
A-G-G-C-T 0301-0201 0.77% 8% 
A-G-G-C-T 1404-0503 0.75% 8% 
A-G-G-C-T 1305-0301 0.75% 8% 
G-A-A-T-C 0701-0303 5.22% 50% 
G-A-A-T-C 0701-0201 5.21% 50% 
rs204999-rs9268528-rs9268542-rs6903608-rs2858870HLA-DRB1-HLA-DQB1HLA haplotype frequencyDistribution of HLA haplotypes by SNP haplotype
A-G-G-C-T 1101-0301 2.99% 31% 
A-G-G-C-T 1401-0503 2.99% 31% 
A-G-G-C-T 1301-0603 1.49% 14% 
A-G-G-C-T 0301-0201 0.77% 8% 
A-G-G-C-T 1404-0503 0.75% 8% 
A-G-G-C-T 1305-0301 0.75% 8% 
G-A-A-T-C 0701-0303 5.22% 50% 
G-A-A-T-C 0701-0201 5.21% 50% 
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