Characteristics of the currently used MRD methods
| MRD method . | Technique . | Markers . | Patient material . | Leukemia type . | Sensitivity . | Advantage . | Disadvantage . | Relevant references . |
|---|---|---|---|---|---|---|---|---|
| Molecular | ||||||||
| rearrangements | RT-qPCR | IGH | DNA | ALL | 10−4 to 10−5 | Patient specific | Requires diagnosis sample. Clonal evolution missed. | 4,5,64,65 |
| ddPCR | TCR | Myeloma | Standardized method | |||||
| CLL | ||||||||
| NGS | DNA | ALL | 10−3 to 10−6 | Does not require construction of patient-specific reagents; may detect clone shifts. | Expensive | 66 | ||
| Including clonoSEQ assay | Myeloma | |||||||
| CLL | ||||||||
| Fusion genes | RT-qPCR | BCR/ABL | RNA | ALL, CML | 10−4 to 10−5 | Standardized primers | Applicable in a limited number of patients | 32,33,56,67 |
| AML/ETO | AML | |||||||
| CBFB-MYH11 | AML | |||||||
| PML/RARa | APL | |||||||
| RUNX1/RUNX1T1 | ALL, AML | |||||||
| BCL3 translocations | CLL | |||||||
| Less common fusions | ||||||||
| Mutations | RT-qPCR | NPM1 | RNA | AML | 10−4 to 10−7 | Extremely sensitive | Applicable in a limited number of patients (∼30%). Clonal evolution missed. | 31,68 |
| NGS | Mutation panels | DNA | AML | 10−3 to 10−5 | Applicable in many patients | Requires further development for assay harmonization/standardization. Insensitive without error correction. | 37 | |
| May detect clone shift | ||||||||
| Overexpression | RT-qPCR | WT1 | RNA | AML | 10−5 | Sensitive | Applicable in a limited number of patients | 36,51,69,70 |
| Immunophenotypic | ||||||||
| Leukemia/myeloma associated immune phenotype | Distinctive antibody panels | Diagnosis and follow-up cells | AML | 10−4 | More informative with diagnosis sample | Clonal evolution missed. Immunophenotypic profiles required. | 71-73 | |
| ALL | Almost all patients | |||||||
| CLL | Relatively fast | |||||||
| Myeloma | ||||||||
| Different from normal | Distinctive antibody panels | Follow-up cells only | AML | 10−4 | Almost all patients. Relatively fast. | Extensive knowledge of normal and regenerating bone marrow required | 74 | |
| Leukemia stem cells | CD34+/CD38 including distinctive antibody panels | Diagnosis and follow-up cells | AML | 10−6 | High prognostic relevance to identify a poor risk group | Only CD34+ leukemia. Large number of cells required. | 61 | |
| MRD method . | Technique . | Markers . | Patient material . | Leukemia type . | Sensitivity . | Advantage . | Disadvantage . | Relevant references . |
|---|---|---|---|---|---|---|---|---|
| Molecular | ||||||||
| rearrangements | RT-qPCR | IGH | DNA | ALL | 10−4 to 10−5 | Patient specific | Requires diagnosis sample. Clonal evolution missed. | 4,5,64,65 |
| ddPCR | TCR | Myeloma | Standardized method | |||||
| CLL | ||||||||
| NGS | DNA | ALL | 10−3 to 10−6 | Does not require construction of patient-specific reagents; may detect clone shifts. | Expensive | 66 | ||
| Including clonoSEQ assay | Myeloma | |||||||
| CLL | ||||||||
| Fusion genes | RT-qPCR | BCR/ABL | RNA | ALL, CML | 10−4 to 10−5 | Standardized primers | Applicable in a limited number of patients | 32,33,56,67 |
| AML/ETO | AML | |||||||
| CBFB-MYH11 | AML | |||||||
| PML/RARa | APL | |||||||
| RUNX1/RUNX1T1 | ALL, AML | |||||||
| BCL3 translocations | CLL | |||||||
| Less common fusions | ||||||||
| Mutations | RT-qPCR | NPM1 | RNA | AML | 10−4 to 10−7 | Extremely sensitive | Applicable in a limited number of patients (∼30%). Clonal evolution missed. | 31,68 |
| NGS | Mutation panels | DNA | AML | 10−3 to 10−5 | Applicable in many patients | Requires further development for assay harmonization/standardization. Insensitive without error correction. | 37 | |
| May detect clone shift | ||||||||
| Overexpression | RT-qPCR | WT1 | RNA | AML | 10−5 | Sensitive | Applicable in a limited number of patients | 36,51,69,70 |
| Immunophenotypic | ||||||||
| Leukemia/myeloma associated immune phenotype | Distinctive antibody panels | Diagnosis and follow-up cells | AML | 10−4 | More informative with diagnosis sample | Clonal evolution missed. Immunophenotypic profiles required. | 71-73 | |
| ALL | Almost all patients | |||||||
| CLL | Relatively fast | |||||||
| Myeloma | ||||||||
| Different from normal | Distinctive antibody panels | Follow-up cells only | AML | 10−4 | Almost all patients. Relatively fast. | Extensive knowledge of normal and regenerating bone marrow required | 74 | |
| Leukemia stem cells | CD34+/CD38 including distinctive antibody panels | Diagnosis and follow-up cells | AML | 10−6 | High prognostic relevance to identify a poor risk group | Only CD34+ leukemia. Large number of cells required. | 61 | |
CML, chronic myeloid leukemia; ddPCR, droplet digital PCR; NGS, next-generation sequencing; RT-qPCR, reverse-transcription quantitative polymerase chain reaction.