Sequence Alignment and Grouping of LCEA Clones
| Group No. . | Clone Name . | Insert Length (bp) . | Sequence Alignment . | Accession No. . | Probability for Sequence Identity . |
|---|---|---|---|---|---|
| 1 | 12-1 12-3 21-3 28-3 59-3 139-2 | 1,850 3,300 2,200 1,850 3,000 3,000 | Human mRNA for eukaryotic translation initiation factor 4 γ | D12686D12686D12686D12686D12686D12686 | 2.2 e−100 2.6 e−123 2.1 e−23 4.8 e−151 0.0 0.0 |
| 2 | 11-4 35-2 41-1 56-3 130-3 | 1,700 2,500 2,600 1,400 1,600 | Human heat shock protein, E coli DnaJ homologue mRNA, complete cds | L08069L08069L08069L08069L08069 | 8.8 e−111 1.9 e−155 9.3 e−133 0.0 0.0 |
| 3 | 51-2 52-4 53-3 | 3,400 3,400 3,400 | Homo sapiensmeningioma-expressed antigen 5 (MGEA5) mRNA, partial cds | AF036144AF036144AF036144 | 0.0 0.0 0.0 |
| 4 | 39-1 137-2 | 1,950 1,700 | Human Jk-recombination signal binding protein (RBPJK) gene exons 1-11, 5′end | L07872L07872 | 2.9 e−105 0.0 |
| 5 | 37-1 130-1 | 1,100 1,000 | Homo sapiens NNP-1 (NNP-1) mRNA, complete cds | U79775U79775 | 0.0 0.0 |
| 6 | 26-4 139-4 | 3,650 2,600 | Human transcriptional repressor (GCF2) mRNA, complete cds | U69609U69609 | 0.0 0.0 |
| 7 | 13-2 | 2,900 | Human ring zinc-finger protein (ZNF127-Xp) gene and 5′ flanking sequence | U41315 | 5.5 e−298 |
| 24-2 | 3,900 | Human mRNA for KIAA0336 gene, complete cds | AB002334 | 0.0 | |
| 25-3 | 950 | Human Rho-associated, coiled-coil containing protein kinase p160ROCK mRNA, complete cds | U43195 | 0.0 | |
| 31-1 | 3,300 | Human transcription factor (NFATc.b) mRNA, complete cds | U08015 | 9.9 e−227 | |
| 44-1 | 1,600 | Human DNA-binding factor mRNA, complete cds | M29204 | 9.1 e−96 | |
| 9-1 | 4,500 | ||||
| 46-1 | 2,300 | ||||
| 11-2 | 1,200 | ||||
| 54-2 | 1,300 | ||||
| 54-1 | 1,600 | AA769694 | 0.0 | ||
| 59-2 | 3,400 | AA632905 | 0.0 | ||
| 61-2 | 350 | C18565 | 1.0 e−122 | ||
| 61-3 | 2,200 | AA683136 | 0.0 | ||
| 96-5 | 4,400 | AA199877 | 1.0 e−179 | ||
| 129-1 | 2,100 | R02582 | 1.0 e−166 |
| Group No. . | Clone Name . | Insert Length (bp) . | Sequence Alignment . | Accession No. . | Probability for Sequence Identity . |
|---|---|---|---|---|---|
| 1 | 12-1 12-3 21-3 28-3 59-3 139-2 | 1,850 3,300 2,200 1,850 3,000 3,000 | Human mRNA for eukaryotic translation initiation factor 4 γ | D12686D12686D12686D12686D12686D12686 | 2.2 e−100 2.6 e−123 2.1 e−23 4.8 e−151 0.0 0.0 |
| 2 | 11-4 35-2 41-1 56-3 130-3 | 1,700 2,500 2,600 1,400 1,600 | Human heat shock protein, E coli DnaJ homologue mRNA, complete cds | L08069L08069L08069L08069L08069 | 8.8 e−111 1.9 e−155 9.3 e−133 0.0 0.0 |
| 3 | 51-2 52-4 53-3 | 3,400 3,400 3,400 | Homo sapiensmeningioma-expressed antigen 5 (MGEA5) mRNA, partial cds | AF036144AF036144AF036144 | 0.0 0.0 0.0 |
| 4 | 39-1 137-2 | 1,950 1,700 | Human Jk-recombination signal binding protein (RBPJK) gene exons 1-11, 5′end | L07872L07872 | 2.9 e−105 0.0 |
| 5 | 37-1 130-1 | 1,100 1,000 | Homo sapiens NNP-1 (NNP-1) mRNA, complete cds | U79775U79775 | 0.0 0.0 |
| 6 | 26-4 139-4 | 3,650 2,600 | Human transcriptional repressor (GCF2) mRNA, complete cds | U69609U69609 | 0.0 0.0 |
| 7 | 13-2 | 2,900 | Human ring zinc-finger protein (ZNF127-Xp) gene and 5′ flanking sequence | U41315 | 5.5 e−298 |
| 24-2 | 3,900 | Human mRNA for KIAA0336 gene, complete cds | AB002334 | 0.0 | |
| 25-3 | 950 | Human Rho-associated, coiled-coil containing protein kinase p160ROCK mRNA, complete cds | U43195 | 0.0 | |
| 31-1 | 3,300 | Human transcription factor (NFATc.b) mRNA, complete cds | U08015 | 9.9 e−227 | |
| 44-1 | 1,600 | Human DNA-binding factor mRNA, complete cds | M29204 | 9.1 e−96 | |
| 9-1 | 4,500 | ||||
| 46-1 | 2,300 | ||||
| 11-2 | 1,200 | ||||
| 54-2 | 1,300 | ||||
| 54-1 | 1,600 | AA769694 | 0.0 | ||
| 59-2 | 3,400 | AA632905 | 0.0 | ||
| 61-2 | 350 | C18565 | 1.0 e−122 | ||
| 61-3 | 2,200 | AA683136 | 0.0 | ||
| 96-5 | 4,400 | AA199877 | 1.0 e−179 | ||
| 129-1 | 2,100 | R02582 | 1.0 e−166 |
All clones were sequenced from both ends for at least 800 bp. Group 7 represents independent, unrelated cDNA clones. cDNA clones with homologies to deposited sequences with unknown functions are referred to by the accession number.