Primers
Primer . | Nucleotide sequence . | Localization . | Position, range . |
---|---|---|---|
rb10b | GGCTAAATATTTTGATGACCAAGTT | RHD cDNA | 1194 to 1217 |
re011d | GCAGCCAACTTCCCCTGTG | RHDpromoter | −883 to −901 |
re014 | GCTCTACCTTGGTCACCTCC | dJ469D22 | 52189 to 52209 |
re04 | AGGTCACATCCATTTATCCCACTG | dJ469D22 | 53968 to 53945 |
re11d | AGAAGATGGGGGAATCTTTTTCCT | dJ469D22 | 51193 to 51216 |
re96 | TTGTGACTGGGCTAGAAAGAAGGTG | dJ469D22 | 242 to 216 |
rea7 | TGTTGCCTGCATTTGTACGTGAG | RHD cDNA | 1311 to 1333 |
rend31 | TTCTGTCTGGGTTGGGGAGGG | dJ465N24 | 128649 to 128629 |
rend32 | GGAGGGGTTAATATGGGTGGC | dJ465N24 | 127355 to 127375 |
rend8b1 | TTTGTCCTGGTTGCCTGTGGTC | dJ465N24 | 69296 to 69274 |
rend8b2 | CAAATCCTGTTGACTGGTCTCGG | dJ465N24 | 68451 to 68473 |
rend9a1 | AACGGCTCCATCACCCCTAAAG | dJ465N24 | 50008 to 49987 |
rend9a2 | CCCACTCCTAGATACCAACCCAAG | dJ465N24 | 49059 to 49083 |
rey14a | CTTTATGCACTGCCTCGTTGAATC | dJ469D22 | 56792 to 56769 |
rey14b | TTGACTGGTGTGGTTGCTGTTG | dJ469D22 | 55863 to 55884 |
rey15a | GCAGAAAGGGGAGTTGATGCTG | dJ469D22 | 55416 to 55395 |
rey7 | CTGACAAAGTTGAGAGCCCACTG | dJ469D22 | 62324 to 62346 |
rey8 | TTAAGCCTACATCCACATGCTGAG | dJ469D22 | 62854 to 62831 |
rez2 | CCTTGGTCTGCCAGAATTTTCA | RHD cDNA | 2738 to 2717 |
rez4 | GTTTGGCATCATAGGAGATTTGGC | dJ465N24 | 120101 to 120124 |
rez7 | CCTGTCCCCATGATTCAGTTACC | dJ465N24 | 124831 to 124854 |
rh7 | ACGTACAAATGCAGGCAAC | RHDcDNA | 1330 to 1312 |
rnb31 | CCTTTTTTTGTTTGTTTTTGGCGGTGC | downstream Rhesus box | 1330 to 1312 |
rr4 | AGCTTACTGGATGACCACCA | RHD cDNA | 1541 to 1522 |
sf1 | GACTGGGGGGAAAAGCGCAATAC | SMP1 cDNA | 142 to 164 |
sf1c | GTATTGCGCTTTTCCCCCCAGTC | SMP1cDNA | 164 to 142 |
sf3 | TGACTTGCTCTCATCCCACATG | SMP1 cDNA | 1696 to 1717 |
sm19 | GGGCTTGAAGCAAGTAAATGGAAG | SMP1 intron 1 | −58 to −35 |
sr1 | GCTATCAATATTTTCTTGGTTACAGACAC | SMP1 cDNA | 2172 to 2144 |
sr3 | GTTCACTGCCATAAGTCTTCAGTGC | SMP1 cDNA | 575 to 551 |
sr3kp | TGGCCGCACTGAAGACTTATGG | SMP1 cDNA | 546 to 567 |
sr45 | CAGCTGCATCTATGATAATCCACC | SMP1cDNA | 224 to 243 |
sr47 | ATGGACAAGTCCGAGGTGATAG | SMP1 cDNA | 315 to 344 |
sr47c | ATCACCTCGGACTTGTCCATTC | SMP1 cDNA | 342 to 321 |
sr5 | GCAATCAGAGATCCAAAGGCCAAC | SMP1 cDNA | 428 to 405 |
sr5c | GTTGGCCTTTGGATCTCTGATTGC | SMP1cDNA | 405 to 428 |
sr55 | GACATAGTATACCCTGGAATTGCTGT | SMP1 cDNA | 472 to 497 |
sr55c | ACAGCAATTCCAGGGTATACTATGTC | SMP1 cDNA | 497 to 472 |
sr9 | CTCCCCCGATTTTAGCCAAGAA | SMP1 cDNA | 27 to 6 |
Primer . | Nucleotide sequence . | Localization . | Position, range . |
---|---|---|---|
rb10b | GGCTAAATATTTTGATGACCAAGTT | RHD cDNA | 1194 to 1217 |
re011d | GCAGCCAACTTCCCCTGTG | RHDpromoter | −883 to −901 |
re014 | GCTCTACCTTGGTCACCTCC | dJ469D22 | 52189 to 52209 |
re04 | AGGTCACATCCATTTATCCCACTG | dJ469D22 | 53968 to 53945 |
re11d | AGAAGATGGGGGAATCTTTTTCCT | dJ469D22 | 51193 to 51216 |
re96 | TTGTGACTGGGCTAGAAAGAAGGTG | dJ469D22 | 242 to 216 |
rea7 | TGTTGCCTGCATTTGTACGTGAG | RHD cDNA | 1311 to 1333 |
rend31 | TTCTGTCTGGGTTGGGGAGGG | dJ465N24 | 128649 to 128629 |
rend32 | GGAGGGGTTAATATGGGTGGC | dJ465N24 | 127355 to 127375 |
rend8b1 | TTTGTCCTGGTTGCCTGTGGTC | dJ465N24 | 69296 to 69274 |
rend8b2 | CAAATCCTGTTGACTGGTCTCGG | dJ465N24 | 68451 to 68473 |
rend9a1 | AACGGCTCCATCACCCCTAAAG | dJ465N24 | 50008 to 49987 |
rend9a2 | CCCACTCCTAGATACCAACCCAAG | dJ465N24 | 49059 to 49083 |
rey14a | CTTTATGCACTGCCTCGTTGAATC | dJ469D22 | 56792 to 56769 |
rey14b | TTGACTGGTGTGGTTGCTGTTG | dJ469D22 | 55863 to 55884 |
rey15a | GCAGAAAGGGGAGTTGATGCTG | dJ469D22 | 55416 to 55395 |
rey7 | CTGACAAAGTTGAGAGCCCACTG | dJ469D22 | 62324 to 62346 |
rey8 | TTAAGCCTACATCCACATGCTGAG | dJ469D22 | 62854 to 62831 |
rez2 | CCTTGGTCTGCCAGAATTTTCA | RHD cDNA | 2738 to 2717 |
rez4 | GTTTGGCATCATAGGAGATTTGGC | dJ465N24 | 120101 to 120124 |
rez7 | CCTGTCCCCATGATTCAGTTACC | dJ465N24 | 124831 to 124854 |
rh7 | ACGTACAAATGCAGGCAAC | RHDcDNA | 1330 to 1312 |
rnb31 | CCTTTTTTTGTTTGTTTTTGGCGGTGC | downstream Rhesus box | 1330 to 1312 |
rr4 | AGCTTACTGGATGACCACCA | RHD cDNA | 1541 to 1522 |
sf1 | GACTGGGGGGAAAAGCGCAATAC | SMP1 cDNA | 142 to 164 |
sf1c | GTATTGCGCTTTTCCCCCCAGTC | SMP1cDNA | 164 to 142 |
sf3 | TGACTTGCTCTCATCCCACATG | SMP1 cDNA | 1696 to 1717 |
sm19 | GGGCTTGAAGCAAGTAAATGGAAG | SMP1 intron 1 | −58 to −35 |
sr1 | GCTATCAATATTTTCTTGGTTACAGACAC | SMP1 cDNA | 2172 to 2144 |
sr3 | GTTCACTGCCATAAGTCTTCAGTGC | SMP1 cDNA | 575 to 551 |
sr3kp | TGGCCGCACTGAAGACTTATGG | SMP1 cDNA | 546 to 567 |
sr45 | CAGCTGCATCTATGATAATCCACC | SMP1cDNA | 224 to 243 |
sr47 | ATGGACAAGTCCGAGGTGATAG | SMP1 cDNA | 315 to 344 |
sr47c | ATCACCTCGGACTTGTCCATTC | SMP1 cDNA | 342 to 321 |
sr5 | GCAATCAGAGATCCAAAGGCCAAC | SMP1 cDNA | 428 to 405 |
sr5c | GTTGGCCTTTGGATCTCTGATTGC | SMP1cDNA | 405 to 428 |
sr55 | GACATAGTATACCCTGGAATTGCTGT | SMP1 cDNA | 472 to 497 |
sr55c | ACAGCAATTCCAGGGTATACTATGTC | SMP1 cDNA | 497 to 472 |
sr9 | CTCCCCCGATTTTAGCCAAGAA | SMP1 cDNA | 27 to 6 |
For the RHD promoter and the RHD cDNA, the positions refer to the distance from A of the start codon. For introns, they refer to the distance from the intron/exon junction. For all other sequences, including SMP1 cDNA, they refer to the distance from the start of the published sequences. The mismatches in primers rey14b, rnb31, and sf3 were inadvertently introduced. Primers re11d, re014, and re04 do not exactly match dJ469D22 because they were designed from our raw sequences covering the 5′ flanking region of RHD.