Primers and PCR amplification conditions for factor VIII mutation screening
Exon . | 5′ Primer . | 3′ Primer . | Size (base pairs) . | Annealing time (sec), °C . | Extension,* sec at 72° . |
---|---|---|---|---|---|
(primers listed from 5′ to 3′ sequence) . | |||||
20 | ACG TTG AGT ACA GTT CTT GG | ACT AAT AGA AGC ATG GAG ATG | 320 | 30, 52° | 50 |
21 | GAA TTT AAT CTC TGA TTT CT | GAG TGA ATG TGA TAC ATT TC | 279 | 30, 52° | 50 |
22 | AAA TAG GTT AAA ATA AAG TGT TAT | TTA ATG GTA TGT AAT TAG TCA TTT A | 218 | 35, 43° | 50 |
23 | ACT CTG TAT TCA CTT TCC AT | AAC TAG AAC AGT TAG TCA CC | 258 | 40, 55° | 50 |
24 | ATA ACT GAG GCT GAA GCA TG | CTC TGA GTC AGT TAA ACA GT | 270 | 30, 54° | 60 |
25 | GAG TGA GAA GTG CTG TGG | TTG CTC TGA AAA TTT GGT CAT A | 381 | 30, 58° | 50 |
26 | GCT TTG CAG TGA CCA TTG TC | AGC TGA GGA GGG AGA GGT GA | 265 | 40, 60° | 50 |
Exon . | 5′ Primer . | 3′ Primer . | Size (base pairs) . | Annealing time (sec), °C . | Extension,* sec at 72° . |
---|---|---|---|---|---|
(primers listed from 5′ to 3′ sequence) . | |||||
20 | ACG TTG AGT ACA GTT CTT GG | ACT AAT AGA AGC ATG GAG ATG | 320 | 30, 52° | 50 |
21 | GAA TTT AAT CTC TGA TTT CT | GAG TGA ATG TGA TAC ATT TC | 279 | 30, 52° | 50 |
22 | AAA TAG GTT AAA ATA AAG TGT TAT | TTA ATG GTA TGT AAT TAG TCA TTT A | 218 | 35, 43° | 50 |
23 | ACT CTG TAT TCA CTT TCC AT | AAC TAG AAC AGT TAG TCA CC | 258 | 40, 55° | 50 |
24 | ATA ACT GAG GCT GAA GCA TG | CTC TGA GTC AGT TAA ACA GT | 270 | 30, 54° | 60 |
25 | GAG TGA GAA GTG CTG TGG | TTG CTC TGA AAA TTT GGT CAT A | 381 | 30, 58° | 50 |
26 | GCT TTG CAG TGA CCA TTG TC | AGC TGA GGA GGG AGA GGT GA | 265 | 40, 60° | 50 |
The first step is 93°C for 2 min for each exonic fragment followed by 35 cycles each of 1 min at 93°, annealing, and then extension.