Annotated list of transcripts enriched in the compared populations corresponding to the clusters in Figure 4
Spot . | Identifier . | Description . | GenBank no. . |
|---|---|---|---|
| HSC enriched | |||
| Cell-surface receptors/ligands | |||
| C0d2 | Itgb1 | Integrin beta 1 (fibronectin and VCAM-1 receptor beta) | Y00769 |
| C08g | Tjp1 | ZO-1; tight junction protein | D14340 |
| D071 | Vipr2 | Vasoactive intestinal peptide receptor 2 | D28132 |
| E09h | Fzd6 | Frizzled homolog 6 (Drosophila) | U43319 |
| E07k | Tek | Tie-2 proto-oncogene | S67051 |
| C05j | Mpl | c-Mpl; thrombopoietin receptor; cellular homolog v-mpl | Z22649 |
| D05g | Ryk | Growth factor receptor | M98547 |
| C12m | Pgy1 | MDR1; multidrug resistance protein; efflux pump | M14757 |
| Signal transduction | |||
| E141 | Plcg1 | Phospholipase C, gamma 1 | X95346 |
| E05n | Axin | Negative regulator of Wnt/β-catenin pathway | AF009011 |
| E14i | Pik3ca | Phosphatidylinositol 3-kinase, catalytic subunit α | U03279 |
| E12k | Map3k3 | MAP kinase kinase 3 (MAPKK3; MKK3; MEK3) | U43187 |
| D02e | Mcl1 | Myeloid cell leukemia 1; Bcl-2 functional homolog | 35623 |
| E13m | Gnb5 | Transducin beta-5 subunit; GTP-binding protein | L34290 |
| F07a | Tln | Talin | X56123 |
| D01h | Nsmaf | N-Smase activation-associated factor | AF013632 |
| D01f | Ripk1 | RIP cell death protein; Fas/APO-1 associated | U25995 |
| F09j | Kif3b | Kinesin-like protein KIF 3B | D26077 |
| E10n | Spi3 | Serpin, similar to human proteinase inhibitor 6 | U25844 |
| F04k | Spi17 | Serine (or cysteine) proteinase inhibitor, neuroserpin | AJ001700 |
| Transcription factors | |||
| A09f | Eya1 | Eyes absent 1 homolog (Drosophila) | U61110 |
| A09n | Eya2 | Eyes absent 1 homolog (Drosophila) | U71208 |
| A09m | Ebf2 | met-mesencephalon-olphactory transcription factor 1 (Mmot 1 similar to Ebf/Olf1) | U71189 |
| B01g | Crebbp | CREB-binding protein-dependent transcriptional cofactors and histone acetyltransferase | S66385 |
| A04c | Miz1 | Msx-interacting zinc finger protein 1 | AF039567 |
| B02m | Egr1 | Early growth response protein 1 (EGR1) | M20157 |
| A13n | Gtf2l | General transcription factor II-I | AF017085 |
| B04a | Hoxa7 | HoxA-7 (Hox-1.1) | M17192 |
| A14j | Zfp60 | Zinc finger protein 60 | U48721 |
| A06b | Hoxa9 | Homeobox protein Hox-A9 | M28449 |
| B011 | Atf4 | Activating transcription factor 4 (mATF4) | M94087 |
| A12c | Six5 | DMAHP/Six5 homeobox 5 homolog | X84814 |
| Cell signaling | |||
| D131 | Hgf | Hepatocyte growth factor | X72307 |
| D13k | Inha | Inhibin alpha subunit | X69618 |
| E04n | II15 | Interleukin-15 | U14332 |
| CLP enriched | |||
| D06g | II7r | Interleukin-7 receptor | M29697 |
| F121 | Rag2 | RAG-2; V(D)J recombination activating protein | M64796 |
| B13a | Cdh6 | Kidney-cadherin (k-cadherin) (cadherin-6) | D82029 |
| C121 | Mobp | Myelin-associated oligodendrocytic basic protein | U81317 |
| Pro-B enriched | |||
| Cell-surface receptors/ligands | |||
| A02f | Cd7 | CD7 antigen | D10329 |
| C01g | Itgb2 | CD18 beta subunit; integrin beta 2 | X14951 |
| Signal transduction | |||
| C021 | Pltp | Phospholipid transfer protein precursor | U37226 |
| F04c | Ctsb | Cathepsin B | M14222 |
| E11i | Pkcb | PKC-beta; protein kinase C beta-II type | U07617 |
| Transcription factors | |||
| B07d | Tcf4 | Transcription factor SEF2 | X91753 |
| B06c | Pou2af1 | POU domain (class 2) associated factor 1 | U43788 |
| A06e | Idb3 | Inhibitor of DNA binding 3 | M60523 |
| Cell signaling | |||
| E01a | Ngfa | Nerve growth factor alpha (alpha-NGF) | M11434 |
| Pro-T enriched | |||
| Cell-surface receptors/ligands | |||
| D05f | Bmpr1 | Bone morphogenetic protein receptor type 1 A | D16250 |
| D08f | Smstr2 | Somatostatin receptor 2 | M81832 |
| D03h | Hmr | Nur77 early response protein; thyroid hormone (TR3) receptor | J04113 |
| D06c | II2rg | Interleukin-2 receptor gamma chain | L20048 |
| C14d | Fas1 | Fas antigen ligand; generalized lymphoproliferation disease gene (gld) in mice | U06948 |
| Signal transduction | |||
| E11d | Lck | Lymphocyte-specific tyrosine-protein kinase LCK | M12056 |
| F01k | Lat | ZAP-70 tyrosine kinase | AF036907 |
| E06m | Cish3 | Cytokine-inducible SH2-containing (SOCS-3) | U88328 |
| B08l | Irf1 | IRF1; interferon regulatory factor 1 | M21065 |
| Transcription factors | |||
| C04c | Fos | c-Fos proto-oncogene, AP-1 component | V00727 |
| C04d | Jun | c-Jun proto-oncogene, AP-1 component | J04115 |
| C04i | Junb | Jun-B; c-jun-related transcription factor | J03236 |
| C04f | Rel | c-rel proto-oncogene | X15842 |
| B01b | Tnfip3 | A20 zinc finger protein; apoptosis inhibitor | U19463 |
| A03a | Zfp36 | Zinc finger protein 36 | M57422 |
| A12n | Stra14 | Basic-helix-loop-helix protein | Y07836 |
| Cell signaling | |||
| D02j | Grzma | Granzyme A, T-cell-specific serine protease | M13226 |
| MEP enriched | |||
| Cell-surface receptors/ligands | |||
| D05a | Epor | Erythropoietin receptor | J04843 |
| Transcription factors | |||
| B03c | Klf1 | Erythroid kruppel-like transcription factor (EKLF1) | M97200 |
| B05g | Nia | NF-1B; nuclear factor I/A | D90176 |
| Cell signaling | |||
| D11c | Epim | Epimorphin (syntaxin 2) | D10475 |
| Miscellaneous | |||
| F14l | Frda | Frataxin; FRDA Friedreich ataxia protein | U95736 |
| F02m | Metap2 | Methionine aminopeptidase 2; initiation factor 2 associated p67 | AB003144 |
| C09b | Hsp86-1 | HSP86; heat shock 86-kDa protein | M36830 |
| F03m | Mmp14 | Membrane-type matrix matalloproteinase | X83536 |
| GMP enriched | |||
| Cell-surface receptors/ligands | |||
| C10l | Grin2a | Glutamate receptor; ionotropic NMDA2A (epsilon I) | D10217 |
| A02h | Fcgr2b | Fc gamma IgG receptor, low affinity llb | X04648 |
| Miscellaneous | |||
| C09l | Gstm2 | Glutathione S-transferase Mu I | J04696 |
| C09k | J03752 | Glutathione S-transferase (microsomal) | J03752 |
| B12b | Prtn3 | Myeloblastin; trypsin-chymotrypsin-related serine protease | U43525 |
| C13g | Hdc | Histidine decarboxylase (HDC) | X57437 |
| F04l | Spi4 | Protease nexin 1 (PN-1) | X70296 |
| CMP enriched | |||
| D02i | Bcl2 | Bcl-2; B-cell lymphoma protein 2; apoptosis inhibitor | M16506 |
| C06h | Csf1r | c-fms proto-oncogene; M-CSF-1 receptor | X68932 |
| GMP + CMP enriched | |||
| Cell-surface receptors/ligands | |||
| C141 | Tnfrsf1a | TNFR 55; tumor necrosis factor receptor 1 (55 kDa) | X57796 |
| Signal transduction | |||
| C07c | Fes | c-Fes proto-oncogene | X12616 |
| Cell signaling | |||
| D14b | Igfbp4 | Insulin-like growth factor binding protein (IGFBP-4) | X81582 |
| D05m | II | ||
| Miscellaneous | |||
| F04h | Cst3 | Cystatin c precursor (cystatin 3) | M59470 |
| F09d | Vim | Vimentin; intermediate filament protein | X51438 |
Spot . | Identifier . | Description . | GenBank no. . |
|---|---|---|---|
| HSC enriched | |||
| Cell-surface receptors/ligands | |||
| C0d2 | Itgb1 | Integrin beta 1 (fibronectin and VCAM-1 receptor beta) | Y00769 |
| C08g | Tjp1 | ZO-1; tight junction protein | D14340 |
| D071 | Vipr2 | Vasoactive intestinal peptide receptor 2 | D28132 |
| E09h | Fzd6 | Frizzled homolog 6 (Drosophila) | U43319 |
| E07k | Tek | Tie-2 proto-oncogene | S67051 |
| C05j | Mpl | c-Mpl; thrombopoietin receptor; cellular homolog v-mpl | Z22649 |
| D05g | Ryk | Growth factor receptor | M98547 |
| C12m | Pgy1 | MDR1; multidrug resistance protein; efflux pump | M14757 |
| Signal transduction | |||
| E141 | Plcg1 | Phospholipase C, gamma 1 | X95346 |
| E05n | Axin | Negative regulator of Wnt/β-catenin pathway | AF009011 |
| E14i | Pik3ca | Phosphatidylinositol 3-kinase, catalytic subunit α | U03279 |
| E12k | Map3k3 | MAP kinase kinase 3 (MAPKK3; MKK3; MEK3) | U43187 |
| D02e | Mcl1 | Myeloid cell leukemia 1; Bcl-2 functional homolog | 35623 |
| E13m | Gnb5 | Transducin beta-5 subunit; GTP-binding protein | L34290 |
| F07a | Tln | Talin | X56123 |
| D01h | Nsmaf | N-Smase activation-associated factor | AF013632 |
| D01f | Ripk1 | RIP cell death protein; Fas/APO-1 associated | U25995 |
| F09j | Kif3b | Kinesin-like protein KIF 3B | D26077 |
| E10n | Spi3 | Serpin, similar to human proteinase inhibitor 6 | U25844 |
| F04k | Spi17 | Serine (or cysteine) proteinase inhibitor, neuroserpin | AJ001700 |
| Transcription factors | |||
| A09f | Eya1 | Eyes absent 1 homolog (Drosophila) | U61110 |
| A09n | Eya2 | Eyes absent 1 homolog (Drosophila) | U71208 |
| A09m | Ebf2 | met-mesencephalon-olphactory transcription factor 1 (Mmot 1 similar to Ebf/Olf1) | U71189 |
| B01g | Crebbp | CREB-binding protein-dependent transcriptional cofactors and histone acetyltransferase | S66385 |
| A04c | Miz1 | Msx-interacting zinc finger protein 1 | AF039567 |
| B02m | Egr1 | Early growth response protein 1 (EGR1) | M20157 |
| A13n | Gtf2l | General transcription factor II-I | AF017085 |
| B04a | Hoxa7 | HoxA-7 (Hox-1.1) | M17192 |
| A14j | Zfp60 | Zinc finger protein 60 | U48721 |
| A06b | Hoxa9 | Homeobox protein Hox-A9 | M28449 |
| B011 | Atf4 | Activating transcription factor 4 (mATF4) | M94087 |
| A12c | Six5 | DMAHP/Six5 homeobox 5 homolog | X84814 |
| Cell signaling | |||
| D131 | Hgf | Hepatocyte growth factor | X72307 |
| D13k | Inha | Inhibin alpha subunit | X69618 |
| E04n | II15 | Interleukin-15 | U14332 |
| CLP enriched | |||
| D06g | II7r | Interleukin-7 receptor | M29697 |
| F121 | Rag2 | RAG-2; V(D)J recombination activating protein | M64796 |
| B13a | Cdh6 | Kidney-cadherin (k-cadherin) (cadherin-6) | D82029 |
| C121 | Mobp | Myelin-associated oligodendrocytic basic protein | U81317 |
| Pro-B enriched | |||
| Cell-surface receptors/ligands | |||
| A02f | Cd7 | CD7 antigen | D10329 |
| C01g | Itgb2 | CD18 beta subunit; integrin beta 2 | X14951 |
| Signal transduction | |||
| C021 | Pltp | Phospholipid transfer protein precursor | U37226 |
| F04c | Ctsb | Cathepsin B | M14222 |
| E11i | Pkcb | PKC-beta; protein kinase C beta-II type | U07617 |
| Transcription factors | |||
| B07d | Tcf4 | Transcription factor SEF2 | X91753 |
| B06c | Pou2af1 | POU domain (class 2) associated factor 1 | U43788 |
| A06e | Idb3 | Inhibitor of DNA binding 3 | M60523 |
| Cell signaling | |||
| E01a | Ngfa | Nerve growth factor alpha (alpha-NGF) | M11434 |
| Pro-T enriched | |||
| Cell-surface receptors/ligands | |||
| D05f | Bmpr1 | Bone morphogenetic protein receptor type 1 A | D16250 |
| D08f | Smstr2 | Somatostatin receptor 2 | M81832 |
| D03h | Hmr | Nur77 early response protein; thyroid hormone (TR3) receptor | J04113 |
| D06c | II2rg | Interleukin-2 receptor gamma chain | L20048 |
| C14d | Fas1 | Fas antigen ligand; generalized lymphoproliferation disease gene (gld) in mice | U06948 |
| Signal transduction | |||
| E11d | Lck | Lymphocyte-specific tyrosine-protein kinase LCK | M12056 |
| F01k | Lat | ZAP-70 tyrosine kinase | AF036907 |
| E06m | Cish3 | Cytokine-inducible SH2-containing (SOCS-3) | U88328 |
| B08l | Irf1 | IRF1; interferon regulatory factor 1 | M21065 |
| Transcription factors | |||
| C04c | Fos | c-Fos proto-oncogene, AP-1 component | V00727 |
| C04d | Jun | c-Jun proto-oncogene, AP-1 component | J04115 |
| C04i | Junb | Jun-B; c-jun-related transcription factor | J03236 |
| C04f | Rel | c-rel proto-oncogene | X15842 |
| B01b | Tnfip3 | A20 zinc finger protein; apoptosis inhibitor | U19463 |
| A03a | Zfp36 | Zinc finger protein 36 | M57422 |
| A12n | Stra14 | Basic-helix-loop-helix protein | Y07836 |
| Cell signaling | |||
| D02j | Grzma | Granzyme A, T-cell-specific serine protease | M13226 |
| MEP enriched | |||
| Cell-surface receptors/ligands | |||
| D05a | Epor | Erythropoietin receptor | J04843 |
| Transcription factors | |||
| B03c | Klf1 | Erythroid kruppel-like transcription factor (EKLF1) | M97200 |
| B05g | Nia | NF-1B; nuclear factor I/A | D90176 |
| Cell signaling | |||
| D11c | Epim | Epimorphin (syntaxin 2) | D10475 |
| Miscellaneous | |||
| F14l | Frda | Frataxin; FRDA Friedreich ataxia protein | U95736 |
| F02m | Metap2 | Methionine aminopeptidase 2; initiation factor 2 associated p67 | AB003144 |
| C09b | Hsp86-1 | HSP86; heat shock 86-kDa protein | M36830 |
| F03m | Mmp14 | Membrane-type matrix matalloproteinase | X83536 |
| GMP enriched | |||
| Cell-surface receptors/ligands | |||
| C10l | Grin2a | Glutamate receptor; ionotropic NMDA2A (epsilon I) | D10217 |
| A02h | Fcgr2b | Fc gamma IgG receptor, low affinity llb | X04648 |
| Miscellaneous | |||
| C09l | Gstm2 | Glutathione S-transferase Mu I | J04696 |
| C09k | J03752 | Glutathione S-transferase (microsomal) | J03752 |
| B12b | Prtn3 | Myeloblastin; trypsin-chymotrypsin-related serine protease | U43525 |
| C13g | Hdc | Histidine decarboxylase (HDC) | X57437 |
| F04l | Spi4 | Protease nexin 1 (PN-1) | X70296 |
| CMP enriched | |||
| D02i | Bcl2 | Bcl-2; B-cell lymphoma protein 2; apoptosis inhibitor | M16506 |
| C06h | Csf1r | c-fms proto-oncogene; M-CSF-1 receptor | X68932 |
| GMP + CMP enriched | |||
| Cell-surface receptors/ligands | |||
| C141 | Tnfrsf1a | TNFR 55; tumor necrosis factor receptor 1 (55 kDa) | X57796 |
| Signal transduction | |||
| C07c | Fes | c-Fes proto-oncogene | X12616 |
| Cell signaling | |||
| D14b | Igfbp4 | Insulin-like growth factor binding protein (IGFBP-4) | X81582 |
| D05m | II | ||
| Miscellaneous | |||
| F04h | Cst3 | Cystatin c precursor (cystatin 3) | M59470 |
| F09d | Vim | Vimentin; intermediate filament protein | X51438 |
The transcripts with a minimum of 2 times enrichment in the corresponding population are listed (a minimum of 1.8 times for CMP-GMP).