The genes that hosted integration event
Sample . | Locus . | RefSeq gene . | Entrez Gene ID . | Exon or intron . | Direction . |
|---|---|---|---|---|---|
| A 1 | 2q14.2 | Protein tyrosine phosphatase, nonreceptor type 4 | 5775 | intron 10 | sense |
| A 2 | 2q21.1 | POTE14 | 404785 | intron 8 | antisense |
| A 3 | 3p14.3 | Calcium channel, voltage-dependent, alpha 2/delta 3 subunit | 55799 | intron 9 | sense |
| A 4 | 3p26.3 | Contactin 4 | 152330 | intron 2 | sense |
| A 5 | 4p15.32 | Hypothetical protein FLJ90013 | 202018 | intron 1 | sense |
| A 6 | 4q28.2 | PHD finger protein 17 | 79960 | exon 9 | sense |
| A 7 | 5q22.2 | Mutated in colorectal cancers | 4163 | intron 1 | sense |
| A 8 | 6q21 | REV3-like, catalytic subunit of DNA polymerase zeta | 5980 | exon 16 | sense |
| A 9 | 7q11.23 | Williams-Beuren syndrome chromosome region 5 | 7462 | intron 1 | sense |
| A 10 | 8q21.13 | CGI-62 protein | 51101 | intron 1 | antisense |
| A 11 | 9p21.3 | Cyclin-dependent kinase inhibitor 2A (p16) | 1029 | intron 1 | antisense |
| A 12 | 10q22.1 | Cadherin-like 23 | 64072 | intron 58 | antisense |
| A 13 | 10q24.32 | Chromosome 10 open reading frame 76 | 79591 | intron 3 | antisense |
| A 14 | 12q24.11 | Carnitine deficiency-associated gene expressed in ventricle 1 | 28981 | intron 10 | antisense |
| A 15 | 13q21.32 | Protocadherin 9 | 5101 | intron 2 | sense |
| A 16 | 14q11.2 | Heterogeneous nuclear ribonucleoprotein C (C1/C2) | 3183 | intron 1 | sense |
| A 17 | 14q32.11 | Echinoderm microtubule associated protein-like 5 | 161436 | intron 2 | sense |
| A 18 | 19q13.11 | CCAAT/enhancer binding protein (C/EBP), alpha | 1050 | exon 1 | sense |
| A 19 | 20p12.3 | Hypothetical protein DJ971N18.2 | 56255 | intron 1 | sense |
| A 20 | 20q13.12 | Zinc finger, SWIM domain containing 3 | 140831 | intron 1 | sense |
| C 1 | 1q41 | UNQ6077 | 375056 | intron 4 | antisense |
| C 2 | 1q43 | Ryanodine receptor 2 (cardiac) | 6262 | intron 2 | antisense |
| C 3 | 2q37.3 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42 kDa | 4705 | exon 3 | antisense |
| C 4 | 4q23 | Alcohol dehydrogenase 5 (class III), chi polypeptide | 128 | exon 3 | sense |
| C 5 | 5q21.3 | F-box and leucine-rich repeat protein 17 | 64839 | intron 6 | sense |
| C 6 | 6p21.2 | Ring finger protein (C3HC4 type) 8 | 9025 | intron 2 | antisense |
| C 7 | 6q15 | RNA guanylyltransferase and 5′-phosphatase | 8732 | intron 13 | sense |
| C 8 | 8q24.22 | Thyroglobulin | 7038 | intron 41 | antisense |
| C 9 | 9q21.11 | LOC220869: dopamine responsive protein | 220869 | intron 2 | sense |
| C 10 | 10p15.1 | GDP dissociation inhibitor 2 | 2665 | intron 9 | sense |
| C 11 | 11q13.1 | EGF-containing fibulin-like extracellular matrix | 30008 | exon 12 | sense |
| C 12 | 14q24.1 | RAD51-like 1 | 5890 | intron 7 | antisense |
| C 13 | 15q21.3 | Hypothetical protein FLJ38736 | 256764 | intron 1 | sense |
| C 14 | 20q13.33 | GTP binding protein 5 (putative) | 26164 | intron 5 | antisense |
| C 15 | 21q21.1 | Ubiquitin specific protease 25 | 29761 | intron 19 | antisense |
Sample . | Locus . | RefSeq gene . | Entrez Gene ID . | Exon or intron . | Direction . |
|---|---|---|---|---|---|
| A 1 | 2q14.2 | Protein tyrosine phosphatase, nonreceptor type 4 | 5775 | intron 10 | sense |
| A 2 | 2q21.1 | POTE14 | 404785 | intron 8 | antisense |
| A 3 | 3p14.3 | Calcium channel, voltage-dependent, alpha 2/delta 3 subunit | 55799 | intron 9 | sense |
| A 4 | 3p26.3 | Contactin 4 | 152330 | intron 2 | sense |
| A 5 | 4p15.32 | Hypothetical protein FLJ90013 | 202018 | intron 1 | sense |
| A 6 | 4q28.2 | PHD finger protein 17 | 79960 | exon 9 | sense |
| A 7 | 5q22.2 | Mutated in colorectal cancers | 4163 | intron 1 | sense |
| A 8 | 6q21 | REV3-like, catalytic subunit of DNA polymerase zeta | 5980 | exon 16 | sense |
| A 9 | 7q11.23 | Williams-Beuren syndrome chromosome region 5 | 7462 | intron 1 | sense |
| A 10 | 8q21.13 | CGI-62 protein | 51101 | intron 1 | antisense |
| A 11 | 9p21.3 | Cyclin-dependent kinase inhibitor 2A (p16) | 1029 | intron 1 | antisense |
| A 12 | 10q22.1 | Cadherin-like 23 | 64072 | intron 58 | antisense |
| A 13 | 10q24.32 | Chromosome 10 open reading frame 76 | 79591 | intron 3 | antisense |
| A 14 | 12q24.11 | Carnitine deficiency-associated gene expressed in ventricle 1 | 28981 | intron 10 | antisense |
| A 15 | 13q21.32 | Protocadherin 9 | 5101 | intron 2 | sense |
| A 16 | 14q11.2 | Heterogeneous nuclear ribonucleoprotein C (C1/C2) | 3183 | intron 1 | sense |
| A 17 | 14q32.11 | Echinoderm microtubule associated protein-like 5 | 161436 | intron 2 | sense |
| A 18 | 19q13.11 | CCAAT/enhancer binding protein (C/EBP), alpha | 1050 | exon 1 | sense |
| A 19 | 20p12.3 | Hypothetical protein DJ971N18.2 | 56255 | intron 1 | sense |
| A 20 | 20q13.12 | Zinc finger, SWIM domain containing 3 | 140831 | intron 1 | sense |
| C 1 | 1q41 | UNQ6077 | 375056 | intron 4 | antisense |
| C 2 | 1q43 | Ryanodine receptor 2 (cardiac) | 6262 | intron 2 | antisense |
| C 3 | 2q37.3 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42 kDa | 4705 | exon 3 | antisense |
| C 4 | 4q23 | Alcohol dehydrogenase 5 (class III), chi polypeptide | 128 | exon 3 | sense |
| C 5 | 5q21.3 | F-box and leucine-rich repeat protein 17 | 64839 | intron 6 | sense |
| C 6 | 6p21.2 | Ring finger protein (C3HC4 type) 8 | 9025 | intron 2 | antisense |
| C 7 | 6q15 | RNA guanylyltransferase and 5′-phosphatase | 8732 | intron 13 | sense |
| C 8 | 8q24.22 | Thyroglobulin | 7038 | intron 41 | antisense |
| C 9 | 9q21.11 | LOC220869: dopamine responsive protein | 220869 | intron 2 | sense |
| C 10 | 10p15.1 | GDP dissociation inhibitor 2 | 2665 | intron 9 | sense |
| C 11 | 11q13.1 | EGF-containing fibulin-like extracellular matrix | 30008 | exon 12 | sense |
| C 12 | 14q24.1 | RAD51-like 1 | 5890 | intron 7 | antisense |
| C 13 | 15q21.3 | Hypothetical protein FLJ38736 | 256764 | intron 1 | sense |
| C 14 | 20q13.33 | GTP binding protein 5 (putative) | 26164 | intron 5 | antisense |
| C 15 | 21q21.1 | Ubiquitin specific protease 25 | 29761 | intron 19 | antisense |
Genes were identified by UCSC Genome Browser, http://genome.ucsc.edu/cgi-bin/hgBlat?command=start. Entrez gene ID was assigned by NCBI Entrez Gene, http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene.
A and C indicate ATL and carrier samples, respectively.