Correlation between chromosomal features and integration sites
. | . | Carrier . | . | ATL . | . | . | |||
|---|---|---|---|---|---|---|---|---|---|
. | Human genome, % . | No. (%) . | P1* . | No. (%) . | P1* . | P2† . | |||
| Total | 56 | NA | 59 | NA | NA | ||||
| SINES | 12.8 | 3 (5.3) | NS | 4 (6.8) | NS | NS | |||
| LINES | 20 | 10 (17.9) | NS | 9 (15.3) | NS | NS | |||
| DNA elements | 2.8 | 1 (1.8) | NS | 2 (3.4) | NS | NS | |||
| LTR elements | 8.3 | 6 (10.7) | NS | 4 (6.8) | NS | NS | |||
| Satellite | |||||||||
| Alpha satellite | 5 | 11 (19.6) | .0153 | 2 (3.4) | NS | .0059 | |||
| Beta satellite | UN | 0 (0.0) | UN | 0 (0.0) | UN | NS | |||
. | . | Carrier . | . | ATL . | . | . | |||
|---|---|---|---|---|---|---|---|---|---|
. | Human genome, % . | No. (%) . | P1* . | No. (%) . | P1* . | P2† . | |||
| Total | 56 | NA | 59 | NA | NA | ||||
| SINES | 12.8 | 3 (5.3) | NS | 4 (6.8) | NS | NS | |||
| LINES | 20 | 10 (17.9) | NS | 9 (15.3) | NS | NS | |||
| DNA elements | 2.8 | 1 (1.8) | NS | 2 (3.4) | NS | NS | |||
| LTR elements | 8.3 | 6 (10.7) | NS | 4 (6.8) | NS | NS | |||
| Satellite | |||||||||
| Alpha satellite | 5 | 11 (19.6) | .0153 | 2 (3.4) | NS | .0059 | |||
| Beta satellite | UN | 0 (0.0) | UN | 0 (0.0) | UN | NS | |||
Percentages of repetitive sequences in the human genome were based on Venter et al.18
NS indicates not significant; UN, unknown; NA, not applicable.
P1 shows comparison with genome frequency with the use of Fisher exact test
P2 shows comparison with carrier integration with the use of Fisher exact test