Single nucleotide polymorphisms on the lipopolysaccharide binding protein gene. (A) Visual genotype of LBP SNPs with a minor allele frequency more than or equal to 10% in 23 healthy whites. Each row represents an individual's genotype for each LBP SNP, which is represented by each column. Blue boxes represent homozygous wild-type genotypes; yellow boxes, heterozygous genotypes; red boxes, homozygous recessive genotypes; gray boxes, undetermined genotypes. Displayed data are arranged according to linkage disequilibrium bins inferred based on an r² threshold of more than or equal to 0.8. Nineteen of 24 SNPs are in 3 linkage disequilibrium bins (B1, B2, and B3). SNP 6878 (rs2232582), SNP 17 002 (rs2232596), and SNP 541 (rs1780616) were selected as linkage disequilibrium tagging SNPs. (B) The pair-wise analysis of linkage disequilibrium, based on r², among these LBP SNPs. These figures are based on LBP sequence data provided by the Innate Immunity Program for Genomic Application (http://innateimmunity.net), which sequenced the entire LBP gene and flanking regions in 23 CEPH European Americans from the Coriell Cell Repository. (C) Image of the entire LBP gene (provided by GeneSNPs) and SNPs identified in dbSNP with a minor allele frequency more than or equal to 10%. This includes a detailed display of SNP 1683 at −778, within a previously reported CAAT box (boxed nucleotides) in the 5′ 1.1-kb promoter region. Color codes are as follows: 5′ promoter region (red shaded area), flanking SNP (black), untranslated region (green), intronic (brown), synonymous SNPs (yellow), and nonsynonymous SNPs (pink).