American Society of Hematology

Figure 1

$Figure 1. SNP array genotyping demonstrates mosaic deletions of chromosome 5q that overlap the 5q33 CDR in 2 patients. Regions of copy loss (shaded) are indicated by decreased log R signal ratio (LRR). Splitting of the heterozygous minor allele frequencies (MAFs) around the expected 0.5 level in regions of reduced copy number indicates mosaic monosomy/disomy (arrows). The displayed region of chromosome 5q is boxed in the ideogram. (A) Patient 1 has 2 apparently discrete regions of mosaic monosomy in 64% of peripheral blood DNA: a 16.1-Mb deletion extending from chr5:141 108 260 to 157 224 755 (involving PCDH1 to CLINT1) that includes all of the 5q33 CDR, as well as a more centromeric, 1.5-Mb deletion at chr5:110 887 600 to 112 390 739 (involving STARD4 to MCC). Similarities in LRR and MAF signal values at both regions in this and subsequent experiments (Figure 2) suggest the possibility of an intrachromosomal rearrangement joining the 2 regions. (B) Analysis of patient 1 mosaicism indicates a nonuniform distribution of copy loss in circulating cell fractions and improvement with lenalidomide treatment. Mosaicism was estimated to involve 64% of whole-blood DNA at the larger deletion region. Lymphoid-enriched (CD3+ or CD19+) and myeloid-enriched (CD3− and CD19−) DNA prepared from magnetic bead-separated peripheral blood populations showed substantial disparity, with monosomy estimated in only 27% of the lymphoid but 82% of the myeloid population. Similar analysis of the myeloid fraction from blood obtained after 3 months of treatment with lenalidomide showed marked diminution of the monosomic fraction to an estimated 31% of myeloid DNA. Similar changes were also observed in the smaller deletion region (not shown). (C) Patient 2 has an 897-Kb deletion extending from chr5:149 496 080 to 150 393 600 (involving PDGFRB to TNIP1), with monosomy in 77% of the peripheral blood DNA sample. This deletion is approximately half the size and is entirely contained within the current 5q33 CDR. The 5q33 CDR and genes with potential relevance to the 5q syndrome are indicated above the chromosome. Coordinates are expressed relative to National Center for Biotechnology Information Build 36.1.$

SNP array genotyping demonstrates mosaic deletions of chromosome 5q that overlap the 5q33 CDR in 2 patients. Regions of copy loss (shaded) are indicated by decreased log R signal ratio (LRR). Splitting of the heterozygous minor allele frequencies (MAFs) around the expected 0.5 level in regions of reduced copy number indicates mosaic monosomy/disomy (arrows). The displayed region of chromosome 5q is boxed in the ideogram. (A) Patient 1 has 2 apparently discrete regions of mosaic monosomy in 64% of peripheral blood DNA: a 16.1-Mb deletion extending from chr5:141 108 260 to 157 224 755 (involving PCDH1 to CLINT1) that includes all of the 5q33 CDR, as well as a more centromeric, 1.5-Mb deletion at chr5:110 887 600 to 112 390 739 (involving STARD4 to MCC). Similarities in LRR and MAF signal values at both regions in this and subsequent experiments (Figure 2) suggest the possibility of an intrachromosomal rearrangement joining the 2 regions. (B) Analysis of patient 1 mosaicism indicates a nonuniform distribution of copy loss in circulating cell fractions and improvement with lenalidomide treatment. Mosaicism was estimated to involve 64% of whole-blood DNA at the larger deletion region. Lymphoid-enriched (CD3⁺ or CD19⁺) and myeloid-enriched (CD3⁻ and CD19⁻) DNA prepared from magnetic bead-separated peripheral blood populations showed substantial disparity, with monosomy estimated in only 27% of the lymphoid but 82% of the myeloid population. Similar analysis of the myeloid fraction from blood obtained after 3 months of treatment with lenalidomide showed marked diminution of the monosomic fraction to an estimated 31% of myeloid DNA. Similar changes were also observed in the smaller deletion region (not shown). (C) Patient 2 has an 897-Kb deletion extending from chr5:149 496 080 to 150 393 600 (involving PDGFRB to TNIP1), with monosomy in 77% of the peripheral blood DNA sample. This deletion is approximately half the size and is entirely contained within the current 5q33 CDR. The 5q33 CDR and genes with potential relevance to the 5q syndrome are indicated above the chromosome. Coordinates are expressed relative to National Center for Biotechnology Information Build 36.1.

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