Focal view of raw CN values. Each panel contains raw CN values from 2 samples. The top sample is from the BCCA study cohort and the bottom sample is from the Pasqualucci et al7 cohort. (A) Focal view of chr14:102,058,998-104,377,837 demonstrating predicted RCOR1 deletions in samples 05-19287 and 00003883_ Columbia_GW6.0. (B) Focal view of chr10:97,592,017-99,740,800 demonstrating predicted LCOR deletions in samples 99-25549 and 00003861_Columbia_GW6.0. (C) Focal view of chr17:14,934,718-17,119,010 demonstrating predicted NCOR1 deletions in samples 03-26969 and 00003861_Columbia_GW6.0.