Figure 8.
Figure 8. Comparison of tPA and FXII structures. Shown are stick diagrams of S1 pocket structures with hydrogen bonds and electrostatic interactions shown as dotted lines (purple). In panels A and B, the position of the oxyanion hole is indicated by the juxtaposed blue spheres that represent the nitrogen atoms of Ser195 and Gly193. (A) Single-chain tPA active S1 pocket crystal structure (pdb:1BDA) is shown with Asp194 stabilized by the salt bridge formed with Lys156 (indicated by + and − symbols), and also by hydrogen bonds with the main-chain nitrogens of Gly142 and Cys191. The cyan stick figure represents the side chain of the arginine P1 residue of the tPA inhibitor dansyl-Glu-Gly-Arg-chloromethylketone. (B) Homology model (SWISS-MODEL48) of the S1 pocket of FXII-T based on the tPA crystal structure where Gln156 forms a hydrogen bond to the Asp194 carboxylate group. The side chain shown in cyan represents the P1 arginine of a substrate (PK or FXI). (C) Crystal structure (pdb:XDE) showing the inactive zymogen conformation of FXIIc where the oxyanion hole is absent (all figures prepared with PyMOL Molecular Graphics System, version 1.8; Schrödinger, LLC).

Comparison of tPA and FXII structures. Shown are stick diagrams of S1 pocket structures with hydrogen bonds and electrostatic interactions shown as dotted lines (purple). In panels A and B, the position of the oxyanion hole is indicated by the juxtaposed blue spheres that represent the nitrogen atoms of Ser195 and Gly193. (A) Single-chain tPA active S1 pocket crystal structure (pdb:1BDA) is shown with Asp194 stabilized by the salt bridge formed with Lys156 (indicated by + and − symbols), and also by hydrogen bonds with the main-chain nitrogens of Gly142 and Cys191. The cyan stick figure represents the side chain of the arginine P1 residue of the tPA inhibitor dansyl-Glu-Gly-Arg-chloromethylketone. (B) Homology model (SWISS-MODEL48 ) of the S1 pocket of FXII-T based on the tPA crystal structure where Gln156 forms a hydrogen bond to the Asp194 carboxylate group. The side chain shown in cyan represents the P1 arginine of a substrate (PK or FXI). (C) Crystal structure (pdb:XDE) showing the inactive zymogen conformation of FXIIc where the oxyanion hole is absent (all figures prepared with PyMOL Molecular Graphics System, version 1.8; Schrödinger, LLC).

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