Fig. 2.
Somatic mutation in Vκ genes amplified from IgM++IgD− PB B cells by single-cell PCR. (Upper part) Vκ sequences are designated Mo for IgM-only, followed by a sample number and the corresponding Vκ family to which the sequence could be assigned. Shown are the nucleotide differences in the Vκ sequences compared with the corresponding germline genes, which are indicated in the right column. The original references of the respective Vκ germline genes (with the exception of LFVk43131) are summarized in a recent review by Schäble and Zachau.27 LFVk431 might represent a polymorphic form of L1.31 Depicted are only those codons of the Vκ germline genes that differed from the respective Vκ sequences. CDRs and codons are numbered according to Kabat et al.32 (Dashes) Nucleotide identity to the corresponding germline genes. (Uppercase letters) Replacement mutations. (Lowercase letters) Silent mutations. (Dots) Codons are absent in the respective Vκ rearrangements. (Lower part) Nucleotide sequences of Vκ-Jκ junctions and number of nucleotide differences to the respective Vκ and Jκ33 germline genes. Indicated are the 3′end of the respective Vκ gene, N region nucleotides (N), and the 5′end of Jκ . (nf ) Nonfunctional rearrangement. The sum of nucleotide differences relative to the corresponding germline genes is shown in the right column. Mutations considered for the analysis are separated by a stretch of at least three identical nucleotides to the 3′Vκ and 5′Jκ ends, respectively. Underlined nucleotides as well as N-region insertions at the Vκ-Jκ junction were not counted as mutations. Sequences are available from EMBO/GenBank/DDBJ under accession no. Z82129-Z82167.