Functional domains and sequence alignments of the C/EBP-ϵ isoforms. Functional domains and predicted transcriptional activities of the 4 C/EBP-ϵ isoforms (32, 30, 27, and 14 kDa), based on mutagenesis and transactivation studies of the human and murine full-length isoforms16,23,49,50 and shorter human isoforms,2,22 are shown schematically in panel A. Alignments of their amino acid sequences and locations of the various transactivation, repression, and bZIP domains are shown in panel B. All 4 isoforms are identical at their carboxyl terminus, which encodes the RDII repressor, basic DNA binding, and bZIP dimerization domains. The activator isoform C/EBP-ϵ32, a 281-amino acid protein, contains 2 transcriptional activation domains (TADI, TADII), 2 repressor domains (RDI, RDII), and the DNA-binding domain composed of the basic region (BR) and leucine zipper (LZ). C/EBP-ϵ30, a 250-amino acid protein, is derived from an alternative translation start site 100 bp (33 amino acids) downstream of the start site for C/EBP-ϵ32. C/EBP-ϵ27, a 253-amino acid protein derived through alternative RNA splicing, contains a unique 68-amino acid N-terminal repression domain we have designated as RD27.22 The shortest isoform, C/EBP-ϵ14, a 130-amino acid protein, consists mainly of the basic DNA binding and leucine zipper domains, the RDII repressor domain, with no transactivation domain. The RDI domain contains a highly conserved “VKEEP” sumoylation consensus sequence (boxed in panel B), through which sumoylation increases the transcriptional activity of the murine activator isoforms.23,49,50