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Journal Articles

Characterization of Plasma and Immune Cells Molecular Landscape That Play a Role in Rapid Progression of Multiple Myeloma Using Cross Center Scrna-Seq Study

Manoj Bhasin, PhD, Beena E Thomas, Reyka G Jayasinghe, PhD, Nicolas Fernandez, PhD, Swati S Bhasin, PhD, Taxiarchis Kourelis, MD, Madhav V. Dhodapkar, MD, Ravi Vij, Shaji K. Kumar, MD, Shaadi Mehr, PhD, Mark Hamilton, PhD, Hearn Jay Cho, MD PhD, Daniel Auclair, Sacha Gnjatic, Li Ding, PhD, David E. Avigan, MD

Blood (2020) 136 (Supplement 1): 6–8.

https://doi.org/10.1182/blood-2020-143350

Published: 2020

Journal Articles

Myeloma Cell Associated Therapeutic Protein Discovery Using Single Cell RNA-Seq Data

Blood (2020) 136 (Supplement 1): 4–5.

https://doi.org/10.1182/blood-2020-142205

Published: 2020

Journal Articles

Integrated Cytof, Scrna-Seq and Cite-Seq Analysis of Bone Marrow Immune Microenvironment in the Mmrf Commpass Study

Lijun Yao, MS, Reyka G Jayasinghe, PhD, Beena E Thomas, Swati S Bhasin, PhD, Nicolas Fernandez, PhD, Taxiarchis Kourelis, MD, Deon Doxie, David E. Avigan, MD, Madhav V. Dhodapkar, MD, Shaji K. Kumar, MD, Ravi Vij, MBBS, Shaadi Mehr, PhD, Mark Hamilton, PhD, Hearn Jay Cho, MD PhD, Daniel Auclair, Sacha Gnjatic, PhD, Manoj Bhasin, PhD, Li Ding, PhD

Blood (2020) 136 (Supplement 1): 28–29.

https://doi.org/10.1182/blood-2020-142534

Published: 2020

Journal Articles

Identification and Validation of CD138- Multiple Myeloma Immune and Tumor Subpopulations Using Cross Center Scrna-Seq Data

Reyka G Jayasinghe, PhD, Lijun Yao, MS, Beena Thomas, Swati S Bhasin, PhD, Nicolas Fernandez, PhD, David E. Avigan, MD, Taxiarchis Kourelis, MD, Madhav V. Dhodapkar, MD, Ravi Vij, MD MBA, Shaadi Mehr, PhD, Mark Hamilton, PhD, Hearn Jay Cho, MD PhD, Daniel Auclair, Sacha Gnjatic, Li Ding, PhD

Blood (2020) 136 (Supplement 1): 15.

https://doi.org/10.1182/blood-2020-143256

Published: 2020

Journal Articles

Single-Cell Pathway Enrichment and Regulatory Profiling of Multiple Myeloma across Disease Stages

Tianjiao Wang, BA, Hua Sun, PhD, Daniel Cui Zhou, BA, Ruiyang Liu, BS, Lijun Yao, MS, Mark A. Fiala, MSW, Daniel R. Kohnen, MBA, Julie O'Neal, PhD, Michael P. Rettig, PhD, Jared S Fowles, PhD, Stephen T. Oh, MD, Reyka G Jayasinghe, PhD, Ravi Vij, MBBS, John F. DiPersio, MD PhD, Li Ding, PhD

Blood (2019) 134 (Supplement_1): 364.

https://doi.org/10.1182/blood-2019-131361

Published: 2019

Journal Articles

Single-Cell Transcriptomic and Proteomic Diversity in Multiple Myeloma

Blood (2019) 134 (Supplement_1): 5531.

https://doi.org/10.1182/blood-2019-131005

Published: 2019

Journal Articles

Characterization of Germline Variants in Multiple Myeloma

Fernanda Martins Rodrigues, MSc, Qingsong Gao, PhD, Kuan-lin Huang, PhD, Adam David Scott, PhD BA, MS, Steven M. Foltz, MS, Justin King, Mark A. Fiala, BS, Daniel R. Kohnen, MBA, John F. DiPersio, MD PhD, Ravi Vij, MBBS, Li Ding, PhD

Blood (2018) 132 (Supplement 1): 4499.

https://doi.org/10.1182/blood-2018-99-118673

Published: 2018

Journal Articles

Comprehensive Multi-Omics Analysis of Gene Fusions in a Large Multiple Myeloma Cohort

Steven M. Foltz, MS, Qingsong Gao, PhD, Christopher J. Yoon, MPhil, Amila Weerasinghe, PhD, Hua Sun, PhD, Lijun Yao, MS, Mark A. Fiala, BS, Daniel R. Kohnen, MBA, Justin King, BS, Yeong Seok Ju, MD PhD, John F. DiPersio, MD PhD, Ravi Vij, MBBS, Li Ding, PhD

Blood (2018) 132 (Supplement 1): 1898.

https://doi.org/10.1182/blood-2018-99-117245

Published: 2018

Journal Articles

Uncovering Clonal and Subclonal Druggable Targets in Multiple Myeloma Using Omic Data

Adam David Scott, PhD, Venkata D Yellapantula, PhD, Christopher J Yoon, BS, Michael Wendl, PhD, Michael H. Tomasson, MD, Mark A Fiala, BS, CCRP, John F. DiPersio, MD, PhD, Ravi Vij, MD, Li Ding, PhD

Blood (2016) 128 (22): 2084.

https://doi.org/10.1182/blood.V128.22.2084.2084

Published: 2016

Journal Articles

Expression of an Oncogenic ERG isoform Characterizes a Distinct Subtype of B-Progenitor Acute Lymphoblastic Leukemia

Jinghui Zhang, PhD, Kelly McCastlain, Chunxu Qu, PhD, Gang Wu, PhD, Michael Edmonson, PhD, Yongjin Li, PhD, Lei Wei, PhD, Debbie Payne-Turner, BS, Hiroki Yoshihara, MDPhD, Michelle L. Churchman, PhD, Esmé Waanders, PhD, Panagiotis Ntziachristos, PhD, Iannis Aifantis, PhD, Kathryn G. Roberts, Jing Ma, PhD, Guangchun Song, PhD, John Easton, PhD, Heather L. Mulder, BS, Xiang Chen, PhD, Michael Rusch, BA, Kristy Boggs, PhD, Bhavin Vadodaria, BS, James Dalton, BS, Marcus L Valentine, PhD, Li Ding, PhD, Charles Lu, PhD, Robert S. Fulton, PhD, Lucinda Fulton, PhD, Yashodan Tabib, PhD, Kerri Ochoa, Meenakshi Devidas, PhD, Deqing Pei, Cheng Cheng, PhD, William E. Evans, PharmD, Ching-Hon Pui, MD, Sima Jeha, MD, Richard C. Harvey, PhD, I-Ming L Chen, DVM, MS, Cheryl L. Willman, MD, Guido Marcucci, MD, Clara D. Bloomfield, MD, Jessica Kohlschmidt, PhD BS, MS, Krzysztof Mrozek, MD PhD, Elisabeth Paietta, PhD, Martin S. Tallman, MD, Wendy Stock, MD, Peter M. Voorhees, MD, Janis Racevskis, MD, Jacob M. Rowe, MD, Selina Luger, MD, Steven M. Kornblau, MD, Sheila A Shurtleff, PhD, Susana C. Raimondi, PhD, Elaine R Mardis, PhD, Richard K Wilson, PhD, Stephen P Hunger, MD, Mignon L. Loh, MD, James R. Downing, MD, Charles G. Mullighan

Blood (2015) 126 (23): 693.

https://doi.org/10.1182/blood.V126.23.693.693

Published: 2015

Journal Articles

Next-Generation Sequencing: A Discovery Tool for Blood Disorders

Elaine R. Mardis, PhD, Li Ding, PhD, Peter Westervelt, John S. Welch, Jeffery M. Klco, MD, John F. DiPersio, MD, PhD, Richard K Wilson, Timothy J. Ley, MD

Blood (2012) 120 (21): SCI-10.

https://doi.org/10.1182/blood.V120.21.SCI-10.SCI-10

Published: 2012

Journal Articles

Transcriptome Sequence Analysis of Pediatric Acute Megakaryoblastic Leukemia Identifies An Inv(16)(p13.3;q24.3)-Encoded CBFA2T3-GLIS2 Fusion Protein As a Recurrent Lesion in 39% of Non-Infant Cases: A Report From the St. Jude Children's Research Hospital – Washington University Pediatric Cancer Genome Project

Blood (2011) 118 (21): 757.

https://doi.org/10.1182/blood.V118.21.757.757

Published: 2011

Journal Articles

Discovery of Novel Recurrent Mutations in Childhood Early T-Cell Precursor Acute Lymphoblastic Leukemia by Whole Genome Sequencing - a Report From the St Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

Jinghui Zhang, PhD, Li Ding, PhD, Linda Holmfeldt, PhD, Gang Wu, PhD, Susan L. Heatley, Ph.D., Debbie Payne-Turner, John Easton, PhD, Xiang Chen, PhD, Jianmin Wang, PhD, Michael Rusch, BA, Charles Lu, PhD, Shann-Ching Chen, PhD, Racquel Collins-Underwood, PhD, Jing Ma, PhD, Kathryn G. Roberts, PhD, Stanley Pounds, PhD, Lei Wei, PhD, Anatoly Ulyanov, PhD, Jared Becksfort, Pankaj Gupta, Robert Huether, PhD, Richard Kriwacki, PhD, Daniel McGoldrick, David Zhao, Daniel Alford, Stephen Espy, Kiran Chand Bobba, Guangchun Song, Deqing Pei, MS, Cheng Cheng, PhD, Stefan Roberts, Michael Barbato, Dario Campana, MD, PhD, Elaine Coustan-Smith, MS, William E. Evans, PharmD, Sheila A Shurtleff, PhD, Maria Kleppe, Jan Cools, PhD, Kristin Shimano, Michelle L. Hermiston, MD, PhD, Sergei Doulatov, PhD, Kolja Eppert, PhD, Elisa Laurenti, PhD, Faiyaz Notta, PhD, John E Dick, PhD, Giuseppe Basso, MD PhD, Stephen P. Hunger, MD, Mignon L Loh, MD, Meenakshi Devidas, PhD, Brent L. Wood, MD, PhD, Stuart S. Winter, MD, Kimberly Dunsmore, MD, Robert S. Fulton, MS, Lucinda A. Fulton, MS, Xin Hong, PhD, Christopher C. Harris, BS, David J. Dooling, PhD, Kerri Ochoa, Kimberly J Johnson, John C Obenauer, Ching-Hon Pui, MD, Susana C. Raimondi, PhD, Clayton W Naeve, PhD, Timothy J Ley, MD, Elaine R Mardis, PhD, Richard K Wilson, PhD, James R Downing, MD, Charles G Mullighan, MBBS, MD, FRACP, FRCPA, MSc

Blood (2011) 118 (21): 68.

https://doi.org/10.1182/blood.V118.21.68.68

Published: 2011

Journal Articles

Whole Genome Sequence Analysis of 22 MLL Rearranged Infant Acute Lymphoblastic Leukemias Reveals Remarkably Few Somatic Mutations: A Report From the St Jude Children‘s Research Hospital - Washington University Pediatric Cancer Genome Project

Blood (2011) 118 (21): 69.

https://doi.org/10.1182/blood.V118.21.69.69

Published: 2011

Journal Articles

Complete Sequencing and Comparison of 12 Normal Karyotype M1 AML Genomes with 12 t(15;17) Positive M3-APL Genomes

Blood (2011) 118 (21): 404.

https://doi.org/10.1182/blood.V118.21.404.404

Published: 2011

Journal Articles

Resolution of a Clinical Dilemma with Whole Genome Sequencing, and Discovery of a New Mechanism for Generating PML-Rara: Insertional Fusion

John S. Welch, MD, PhD, Li Ding, PhD, Ken Chen, PhD, David E. Larson, PhD, Shashikant Kulkarni, PhD, Jacqueline E. Payton, MD, PhD, John Wallis, PhD, Joelle Veizer, BS, Michael D. McLellan, Tammi L. Vickery, BS, Jerry P. Reed, MS, Daniel C Koboldt, MS, Jeffery Klco, MD, John F. DiPersio, MD, PhD, Elaine R. Mardis, PhD, Timothy J Ley, MD, Richard K. Wilson, PhD, Peter Westervelt, MD, PhD

Blood (2010) 116 (21): 2755.

https://doi.org/10.1182/blood.V116.21.2755.2755

Published: 2010

Journal Articles

DNA Sequence of the Cancer Genome of a Patient with Therapy-Related Acute Myeloid Leukemia

Blood (2010) 116 (21): 580.

https://doi.org/10.1182/blood.V116.21.580.580

Published: 2010

Journal Articles

Mutations In the DNA Methyltransferase Gene DNMT3A Are Highly Recurrent In Patients with Intermediate Risk Acute Myeloid Leukemia, and Predict Poor Outcomes

Timothy J Ley, MD, Li Ding, PhD, Matthew J. Walter, MD, Michael D. McLellan, BS, Tamara Lamprecht, BS, David E. Larson, PhD, Cyriac Kandoth, PhD, Jacqueline E. Payton, MD, PhD, Jack Baty, BA, John S. Welch, MD, PhD, Christopher C. Harris, BS, Cheryl F. Lichti, PhD, R. Reid Townsend, MD, Robert S. Fulton, MS, David J. Dooling, PhD, Daniel C. Koboldt, MS, Heather Schmidt, BS, Qunyuan Zhang, PhD, John R. Osborne, BS, Ling Lin, MS, Michelle O'Laughlin, BS, Joshua F. McMichael, BS, Kim D. Delehaunty, BA, Sean D. McGrath, MS, Lucinda A. Fulton, MS, Vincent J. Magrini, PhD, Tammi L. Vickery, BS, Jasreet Hundal, MS, Lisa L. Cook, Joshua J. Conyers, Gary W. Swift, BS, Jerry P. Reed, MS, Patricia A. Alldredge, MS, Todd Wylie, BS, Jason Walker, BA, BS, Joelle Kalicki-Veizer, BS, Mark A. Watson, MD, PhD, Sharon Heath, William D. Shannon, PhD, Nobish Varghese, MS, Rakesh Nagarajan, MD, PhD, Peter Westervelt, MD, PhD, Michael H. Tomasson, MD, Daniel C. Link, MD, Timothy A. Graubert, MD, John F. DiPersio, MD, PhD, Elaine R. Mardis, PhD, Richard K. Wilson, PhD

Blood (2010) 116 (21): 99.

https://doi.org/10.1182/blood.V116.21.99.99

Published: 2010

NARROW

Characterization of Plasma and Immune Cells Molecular Landscape That Play a Role in Rapid Progression of Multiple Myeloma Using Cross Center Scrna-Seq Study

Myeloma Cell Associated Therapeutic Protein Discovery Using Single Cell RNA-Seq Data

Integrated Cytof, Scrna-Seq and Cite-Seq Analysis of Bone Marrow Immune Microenvironment in the Mmrf Commpass Study

Identification and Validation of CD138- Multiple Myeloma Immune and Tumor Subpopulations Using Cross Center Scrna-Seq Data

Single-Cell Pathway Enrichment and Regulatory Profiling of Multiple Myeloma across Disease Stages

Single-Cell Transcriptomic and Proteomic Diversity in Multiple Myeloma

Characterization of Germline Variants in Multiple Myeloma

Comprehensive Multi-Omics Analysis of Gene Fusions in a Large Multiple Myeloma Cohort

Uncovering Clonal and Subclonal Druggable Targets in Multiple Myeloma Using Omic Data

Expression of an Oncogenic ERG isoform Characterizes a Distinct Subtype of B-Progenitor Acute Lymphoblastic Leukemia

Next-Generation Sequencing: A Discovery Tool for Blood Disorders

Discovery of Novel Recurrent Mutations in Childhood Early T-Cell Precursor Acute Lymphoblastic Leukemia by Whole Genome Sequencing - a Report From the St Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

Whole Genome Sequence Analysis of 22 MLL Rearranged Infant Acute Lymphoblastic Leukemias Reveals Remarkably Few Somatic Mutations: A Report From the St Jude Children‘s Research Hospital - Washington University Pediatric Cancer Genome Project

Complete Sequencing and Comparison of 12 Normal Karyotype M1 AML Genomes with 12 t(15;17) Positive M3-APL Genomes

Resolution of a Clinical Dilemma with Whole Genome Sequencing, and Discovery of a New Mechanism for Generating PML-Rara: Insertional Fusion

DNA Sequence of the Cancer Genome of a Patient with Therapy-Related Acute Myeloid Leukemia

Mutations In the DNA Methyltransferase Gene DNMT3A Are Highly Recurrent In Patients with Intermediate Risk Acute Myeloid Leukemia, and Predict Poor Outcomes

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American Society of Hematology

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